Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6CVQ

Human Aprataxin (Aptx) H201Q bound to RNA-DNA, AMP and Zn product complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
B0003824molecular_functioncatalytic activity
Functional Information from PDB Data
site_idAC1
Number of Residues18
Detailsbinding site for residue AMP A 401
ChainResidue
ALEU171
ASER255
AMET256
AHIS260
AHIS262
AHOH535
AHOH603
AHOH610
AHOH613
DG1
ASER174
AASP193
ALYS194
ATYR195
ALYS197
AGLN201
AHIS251
APRO254

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 402
ChainResidue
ACYS319
ACYS322
AHIS335
AHIS339

site_idAC3
Number of Residues6
Detailsbinding site for residue NA A 403
ChainResidue
ASER255
AHOH705
AHOH815
DHOH132
DHOH139
DHOH141

site_idAC4
Number of Residues6
Detailsbinding site for residue BME A 404
ChainResidue
ATYR195
ACYS272
ALYS274
AHOH507
BGLN298
DDT3

site_idAC5
Number of Residues6
Detailsbinding site for residue GOL A 405
ChainResidue
AASP307
AGLY308
APRO310
AGLU311
AHOH562
BLYS194

site_idAC6
Number of Residues6
Detailsbinding site for residue GOL A 406
ChainResidue
AASP185
AGLU186
AGLN187
AHOH513
AHOH645
AHOH667

site_idAC7
Number of Residues22
Detailsbinding site for residue AMP B 401
ChainResidue
BLEU171
BSER174
BILE191
BLYS192
BASP193
BLYS194
BTYR195
BLEU203
BHIS251
BSER255
BMET256
BHIS260
BHIS262
BHOH505
BHOH517
BHOH526
BHOH563
BHOH581
BHOH592
BHOH621
BHOH646
GG1

site_idAC8
Number of Residues4
Detailsbinding site for residue ZN B 402
ChainResidue
BCYS319
BCYS322
BHIS335
BHIS339

site_idAC9
Number of Residues6
Detailsbinding site for residue BME B 403
ChainResidue
BTYR195
BPRO271
BCYS272
BLYS274
GDT3
GHOH105

Functional Information from PROSITE/UniProt
site_idPS00028
Number of Residues21
DetailsZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Che..CqqlLpsipqlkeHlrk..H
ChainResidueDetails
ACYS319-HIS339

site_idPS00892
Number of Residues19
DetailsHIT_1 HIT domain signature. RlgyhAiPsMsHVHLHVIS
ChainResidueDetails
AARG247-SER265

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues44
DetailsZN_FING: C2H2-type => ECO:0000255|PROSITE-ProRule:PRU00042, ECO:0000305|PubMed:17276982, ECO:0000305|PubMed:24362567
ChainResidueDetails
ALEU317-HIS339
BLEU317-HIS339

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Tele-AMP-histidine intermediate => ECO:0000269|PubMed:24362567
ChainResidueDetails
AHIS260
BHIS260

site_idSWS_FT_FI3
Number of Residues8
DetailsSITE: Interaction with DNA substrate => ECO:0000269|PubMed:24362567
ChainResidueDetails
ASER174
AHIS251
AHIS262
ALYS277
BSER174
BHIS251
BHIS262
BLYS277

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon