6CSX
Single particles Cryo-EM structure of AcrB D407A associated with lipid bilayer at 3.0 Angstrom
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005515 | molecular_function | protein binding |
A | 0005886 | cellular_component | plasma membrane |
A | 0009410 | biological_process | response to xenobiotic stimulus |
A | 0009636 | biological_process | response to toxic substance |
A | 0015125 | molecular_function | bile acid transmembrane transporter activity |
A | 0015562 | molecular_function | efflux transmembrane transporter activity |
A | 0015567 | molecular_function | alkane transmembrane transporter activity |
A | 0015721 | biological_process | bile acid and bile salt transport |
A | 0015895 | biological_process | alkane transport |
A | 0015908 | biological_process | fatty acid transport |
A | 0016020 | cellular_component | membrane |
A | 0022857 | molecular_function | transmembrane transporter activity |
A | 0042802 | molecular_function | identical protein binding |
A | 0042908 | biological_process | xenobiotic transport |
A | 0042910 | molecular_function | xenobiotic transmembrane transporter activity |
A | 0042930 | biological_process | enterobactin transport |
A | 0042931 | molecular_function | enterobactin transmembrane transporter activity |
A | 0046677 | biological_process | response to antibiotic |
A | 0055085 | biological_process | transmembrane transport |
A | 0098567 | cellular_component | periplasmic side of plasma membrane |
A | 0140330 | biological_process | xenobiotic detoxification by transmembrane export across the cell outer membrane |
A | 1990281 | cellular_component | efflux pump complex |
B | 0005515 | molecular_function | protein binding |
B | 0005886 | cellular_component | plasma membrane |
B | 0009410 | biological_process | response to xenobiotic stimulus |
B | 0009636 | biological_process | response to toxic substance |
B | 0015125 | molecular_function | bile acid transmembrane transporter activity |
B | 0015562 | molecular_function | efflux transmembrane transporter activity |
B | 0015567 | molecular_function | alkane transmembrane transporter activity |
B | 0015721 | biological_process | bile acid and bile salt transport |
B | 0015895 | biological_process | alkane transport |
B | 0015908 | biological_process | fatty acid transport |
B | 0016020 | cellular_component | membrane |
B | 0022857 | molecular_function | transmembrane transporter activity |
B | 0042802 | molecular_function | identical protein binding |
B | 0042908 | biological_process | xenobiotic transport |
B | 0042910 | molecular_function | xenobiotic transmembrane transporter activity |
B | 0042930 | biological_process | enterobactin transport |
B | 0042931 | molecular_function | enterobactin transmembrane transporter activity |
B | 0046677 | biological_process | response to antibiotic |
B | 0055085 | biological_process | transmembrane transport |
B | 0098567 | cellular_component | periplasmic side of plasma membrane |
B | 0140330 | biological_process | xenobiotic detoxification by transmembrane export across the cell outer membrane |
B | 1990281 | cellular_component | efflux pump complex |
C | 0005515 | molecular_function | protein binding |
C | 0005886 | cellular_component | plasma membrane |
C | 0009410 | biological_process | response to xenobiotic stimulus |
C | 0009636 | biological_process | response to toxic substance |
C | 0015125 | molecular_function | bile acid transmembrane transporter activity |
C | 0015562 | molecular_function | efflux transmembrane transporter activity |
C | 0015567 | molecular_function | alkane transmembrane transporter activity |
C | 0015721 | biological_process | bile acid and bile salt transport |
C | 0015895 | biological_process | alkane transport |
C | 0015908 | biological_process | fatty acid transport |
C | 0016020 | cellular_component | membrane |
C | 0022857 | molecular_function | transmembrane transporter activity |
C | 0042802 | molecular_function | identical protein binding |
C | 0042908 | biological_process | xenobiotic transport |
C | 0042910 | molecular_function | xenobiotic transmembrane transporter activity |
C | 0042930 | biological_process | enterobactin transport |
C | 0042931 | molecular_function | enterobactin transmembrane transporter activity |
C | 0046677 | biological_process | response to antibiotic |
C | 0055085 | biological_process | transmembrane transport |
C | 0098567 | cellular_component | periplasmic side of plasma membrane |
C | 0140330 | biological_process | xenobiotic detoxification by transmembrane export across the cell outer membrane |
C | 1990281 | cellular_component | efflux pump complex |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | binding site for residue PTY B 1101 |
Chain | Residue |
A | PTY1101 |
A | PTY1102 |
B | GLN439 |
B | PTY1102 |
B | PTY1105 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue PTY B 1102 |
Chain | Residue |
B | MET1 |
B | PHE4 |
B | PTY1101 |
B | PTY1105 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue PTY B 1103 |
Chain | Residue |
B | ARG8 |
B | PTY1104 |
C | GLY436 |
C | GLN439 |
C | ALA890 |
C | LYS955 |
site_id | AC4 |
Number of Residues | 2 |
Details | binding site for residue PTY B 1104 |
Chain | Residue |
B | PTY1103 |
C | PTY1102 |
site_id | AC5 |
Number of Residues | 4 |
Details | binding site for residue PTY B 1105 |
Chain | Residue |
A | PTY1102 |
A | PTY1103 |
B | PTY1101 |
B | PTY1102 |
site_id | AC6 |
Number of Residues | 7 |
Details | binding site for residue PTY B 1106 |
Chain | Residue |
A | ALA22 |
A | LEU25 |
A | LYS29 |
A | ALA381 |
B | SER450 |
B | PRO455 |
B | PHE458 |
site_id | AC7 |
Number of Residues | 3 |
Details | binding site for residue PTY B 1107 |
Chain | Residue |
B | ALA22 |
B | ALA26 |
B | ALA381 |
site_id | AC8 |
Number of Residues | 1 |
Details | binding site for residue D12 B 1108 |
Chain | Residue |
B | PHE386 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residue PTY C 1101 |
Chain | Residue |
A | PTY1103 |
A | PTY1104 |
C | MET1 |
C | PTY1102 |
site_id | AD1 |
Number of Residues | 6 |
Details | binding site for residue PTY C 1102 |
Chain | Residue |
B | PTY1104 |
C | MET1 |
C | PRO2 |
C | LEU483 |
C | LEU486 |
C | PTY1101 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue PTY C 1103 |
Chain | Residue |
A | PHE458 |
C | LEU25 |
C | ALA381 |
C | ALA384 |
site_id | AD3 |
Number of Residues | 3 |
Details | binding site for residue PTY C 1104 |
Chain | Residue |
C | PHE458 |
C | PHE459 |
C | GLY460 |
site_id | AD4 |
Number of Residues | 7 |
Details | binding site for residue PTY A 1101 |
Chain | Residue |
A | PHE4 |
A | ARG8 |
A | PTY1102 |
B | VAL443 |
B | MET447 |
B | CYS887 |
B | PTY1101 |
site_id | AD5 |
Number of Residues | 5 |
Details | binding site for residue PTY A 1102 |
Chain | Residue |
A | PHE4 |
A | PHE5 |
A | PTY1101 |
B | PTY1101 |
B | PTY1105 |
site_id | AD6 |
Number of Residues | 3 |
Details | binding site for residue PTY A 1103 |
Chain | Residue |
A | MET1 |
B | PTY1105 |
C | PTY1101 |
site_id | AD7 |
Number of Residues | 5 |
Details | binding site for residue PTY A 1104 |
Chain | Residue |
A | GLY440 |
A | CYS887 |
A | LEU891 |
A | PTY1105 |
C | PTY1101 |
site_id | AD8 |
Number of Residues | 3 |
Details | binding site for residue PTY A 1105 |
Chain | Residue |
A | GLN439 |
A | GLY440 |
A | PTY1104 |
site_id | AD9 |
Number of Residues | 4 |
Details | binding site for residue PTY A 1106 |
Chain | Residue |
A | PHE458 |
A | ILE472 |
A | SER476 |
C | ALA385 |
site_id | AE1 |
Number of Residues | 2 |
Details | binding site for residue PTY A 1107 |
Chain | Residue |
A | ALA385 |
A | GLY387 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 462 |
Details | TOPO_DOM: Cytoplasmic => ECO:0000269|PubMed:15919996 |
Chain | Residue | Details |
B | MET1-PRO9 | |
C | GLU414-ILE438 | |
C | ALA491-THR538 | |
C | ALA889-PRO898 | |
C | LEU944-LEU972 | |
C | ILE1019-HIS1049 | |
A | MET1-PRO9 | |
A | LEU357-THR365 | |
A | GLU414-ILE438 | |
A | ALA491-THR538 | |
A | ALA889-PRO898 | |
B | LEU357-THR365 | |
A | LEU944-LEU972 | |
A | ILE1019-HIS1049 | |
B | GLU414-ILE438 | |
B | ALA491-THR538 | |
B | ALA889-PRO898 | |
B | LEU944-LEU972 | |
B | ILE1019-HIS1049 | |
C | MET1-PRO9 | |
C | LEU357-THR365 |
site_id | SWS_FT_FI2 |
Number of Residues | 54 |
Details | TRANSMEM: Helical; Name=1 |
Chain | Residue | Details |
B | ILE10-LEU28 | |
C | ILE10-LEU28 | |
A | ILE10-LEU28 |
site_id | SWS_FT_FI3 |
Number of Residues | 1932 |
Details | TOPO_DOM: Periplasmic => ECO:0000269|PubMed:15919996 |
Chain | Residue | Details |
B | LYS29-SER336 | |
C | PHE556-ASN871 | |
C | ARG919-ASP924 | |
C | THR993-GLY998 | |
A | LYS29-SER336 | |
A | PHE386-ASN391 | |
A | PHE458-ALA465 | |
A | PHE556-ASN871 | |
A | ARG919-ASP924 | |
A | THR993-GLY998 | |
B | PHE386-ASN391 | |
B | PHE458-ALA465 | |
B | PHE556-ASN871 | |
B | ARG919-ASP924 | |
B | THR993-GLY998 | |
C | LYS29-SER336 | |
C | PHE386-ASN391 | |
C | PHE458-ALA465 |
site_id | SWS_FT_FI4 |
Number of Residues | 57 |
Details | TRANSMEM: Helical; Name=2 |
Chain | Residue | Details |
B | ILE337-TYR356 | |
C | ILE337-TYR356 | |
A | ILE337-TYR356 |
site_id | SWS_FT_FI5 |
Number of Residues | 57 |
Details | TRANSMEM: Helical; Name=3 |
Chain | Residue | Details |
B | LEU366-ALA385 | |
C | LEU366-ALA385 | |
A | LEU366-ALA385 |
site_id | SWS_FT_FI6 |
Number of Residues | 63 |
Details | TRANSMEM: Helical; Name=4 |
Chain | Residue | Details |
B | THR392-VAL413 | |
C | THR392-VAL413 | |
A | THR392-VAL413 |
site_id | SWS_FT_FI7 |
Number of Residues | 54 |
Details | TRANSMEM: Helical; Name=5 |
Chain | Residue | Details |
B | GLN439-ALA457 | |
C | GLN439-ALA457 | |
A | GLN439-ALA457 |
site_id | SWS_FT_FI8 |
Number of Residues | 72 |
Details | TRANSMEM: Helical; Name=6 |
Chain | Residue | Details |
B | ILE466-PRO490 | |
C | ILE466-PRO490 | |
A | ILE466-PRO490 |
site_id | SWS_FT_FI9 |
Number of Residues | 48 |
Details | TRANSMEM: Helical; Name=7 |
Chain | Residue | Details |
B | GLY539-LEU555 | |
C | GLY539-LEU555 | |
A | GLY539-LEU555 |
site_id | SWS_FT_FI10 |
Number of Residues | 48 |
Details | TRANSMEM: Helical; Name=8 |
Chain | Residue | Details |
B | GLN872-LEU888 | |
C | GLN872-LEU888 | |
A | GLN872-LEU888 |
site_id | SWS_FT_FI11 |
Number of Residues | 57 |
Details | TRANSMEM: Helical; Name=9 |
Chain | Residue | Details |
B | PHE899-PHE918 | |
C | PHE899-PHE918 | |
A | PHE899-PHE918 |
site_id | SWS_FT_FI12 |
Number of Residues | 54 |
Details | TRANSMEM: Helical; Name=10 |
Chain | Residue | Details |
B | VAL925-ILE943 | |
C | VAL925-ILE943 | |
A | VAL925-ILE943 |
site_id | SWS_FT_FI13 |
Number of Residues | 57 |
Details | TRANSMEM: Helical; Name=11 |
Chain | Residue | Details |
B | ARG973-SER992 | |
C | ARG973-SER992 | |
A | ARG973-SER992 |
site_id | SWS_FT_FI14 |
Number of Residues | 57 |
Details | TRANSMEM: Helical; Name=12 |
Chain | Residue | Details |
B | ALA999-ALA1018 | |
C | ALA999-ALA1018 | |
A | ALA999-ALA1018 |