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6CST

Structure of human DNA polymerase kappa with DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006281biological_processDNA repair
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue MG A 601
ChainResidue
AASP107
AMET108
AASP198
ADZ4619

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 602
ChainResidue
CDC13
AASP107
AASP198
AGLU199
ADZ4619
AHOH804

site_idAC3
Number of Residues4
Detailsbinding site for residue PEG A 603
ChainResidue
AALA110
AASN140
ATYR141
AHIS142

site_idAC4
Number of Residues5
Detailsbinding site for residue PEG A 604
ChainResidue
AHIS397
AGLY403
AHOH710
AHOH769
AHOH832

site_idAC5
Number of Residues3
Detailsbinding site for residue PEG A 605
ChainResidue
ALYS71
AALA72
APEG606

site_idAC6
Number of Residues4
Detailsbinding site for residue PEG A 606
ChainResidue
AMET68
ALYS71
AGLN379
APEG605

site_idAC7
Number of Residues1
Detailsbinding site for residue IOD A 608
ChainResidue
AASP32

site_idAC8
Number of Residues3
Detailsbinding site for residue EDO A 612
ChainResidue
AASN327
AGLY331
AGLN332

site_idAC9
Number of Residues1
Detailsbinding site for residue EDO A 613
ChainResidue
APRO517

site_idAD1
Number of Residues2
Detailsbinding site for residue EDO A 614
ChainResidue
ALYS326
AEDO615

site_idAD2
Number of Residues5
Detailsbinding site for residue EDO A 615
ChainResidue
ALYS326
APHE345
ALEU349
AEDO614
AHOH747

site_idAD3
Number of Residues5
Detailsbinding site for residue EDO A 616
ChainResidue
AGLN436
AALA481
AGLU482
APHE485
AHOH723

site_idAD4
Number of Residues8
Detailsbinding site for residue EDO A 617
ChainResidue
AGLU209
APRO350
AILE371
ATHR372
AHOH701
AHOH702
AHOH718
AHOH853

site_idAD5
Number of Residues4
Detailsbinding site for residue EDO A 618
ChainResidue
AARG18
AHOH703
AHOH819
CDA11

site_idAD6
Number of Residues25
Detailsbinding site for residue DZ4 A 619
ChainResidue
ALYS25
AASP107
AMET108
AASP109
AALA110
APHE111
ATYR112
ASER137
ATHR138
ATYR141
AARG144
AASP198
ALYS328
AMG601
AMG602
AHOH732
AHOH757
AHOH778
AHOH791
AHOH796
AHOH804
AHOH850
AHOH874
CDC13
DDT5

site_idAD7
Number of Residues2
Detailsbinding site for residue PGE A 620
ChainResidue
AASN327
APRO329

site_idAD8
Number of Residues2
Detailsbinding site for residue CL A 623
ChainResidue
AASP172
AHOH760

site_idAD9
Number of Residues1
Detailsbinding site for residue CL A 625
ChainResidue
AMET19

site_idAE1
Number of Residues4
Detailsbinding site for residue MG B 601
ChainResidue
BASP107
BMET108
BASP198
BDZ4608

site_idAE2
Number of Residues5
Detailsbinding site for residue MG B 602
ChainResidue
BASP107
BASP198
BGLU199
BDZ4608
PDC13

site_idAE3
Number of Residues5
Detailsbinding site for residue PEG B 603
ChainResidue
BASP109
BMET117
BASN140
BTYR141
BHIS142

site_idAE4
Number of Residues1
Detailsbinding site for residue EDO B 607
ChainResidue
BTYR432

site_idAE5
Number of Residues22
Detailsbinding site for residue DZ4 B 608
ChainResidue
BASP107
BMET108
BASP109
BALA110
BPHE111
BTYR112
BSER137
BTHR138
BTYR141
BARG144
BASP198
BLYS328
BMG601
BMG602
BHOH756
BHOH769
BHOH772
BHOH773
BHOH833
PDC13
TDT5
TDG6

site_idAE6
Number of Residues1
Detailsbinding site for residue CL B 610
ChainResidue
BARG175

site_idAE7
Number of Residues2
Detailsbinding site for residue CL B 612
ChainResidue
BLYS182
BSER196

site_idAE8
Number of Residues2
Detailsbinding site for residue K B 613
ChainResidue
BHOH803
BHOH836

site_idAE9
Number of Residues1
Detailsbinding site for residue K D 101
ChainResidue
DDC4

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP107
AASP198
AGLU199
BASP107
BASP198
BGLU199

227111

PDB entries from 2024-11-06

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