Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6CND

Yeast RNA polymerase III natural open complex (nOC)

Functional Information from GO Data
ChainGOidnamespacecontents
A0000428cellular_componentDNA-directed RNA polymerase complex
A0001056molecular_functionRNA polymerase III activity
A0003677molecular_functionDNA binding
A0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005666cellular_componentRNA polymerase III complex
A0006351biological_processDNA-templated transcription
A0006383biological_processtranscription by RNA polymerase III
A0006384biological_processtranscription initiation at RNA polymerase III promoter
A0006386biological_processtermination of RNA polymerase III transcription
A0008270molecular_functionzinc ion binding
A0016779molecular_functionnucleotidyltransferase activity
A0034062molecular_function5'-3' RNA polymerase activity
A0042797biological_processtRNA transcription by RNA polymerase III
A0046872molecular_functionmetal ion binding
B0000428cellular_componentDNA-directed RNA polymerase complex
B0001056molecular_functionRNA polymerase III activity
B0003677molecular_functionDNA binding
B0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
B0005634cellular_componentnucleus
B0005654cellular_componentnucleoplasm
B0005666cellular_componentRNA polymerase III complex
B0006351biological_processDNA-templated transcription
B0006383biological_processtranscription by RNA polymerase III
B0006384biological_processtranscription initiation at RNA polymerase III promoter
B0006386biological_processtermination of RNA polymerase III transcription
B0008270molecular_functionzinc ion binding
B0016779molecular_functionnucleotidyltransferase activity
B0032549molecular_functionribonucleoside binding
B0034062molecular_function5'-3' RNA polymerase activity
B0042797biological_processtRNA transcription by RNA polymerase III
B0046872molecular_functionmetal ion binding
C0000428cellular_componentDNA-directed RNA polymerase complex
C0001054molecular_functionRNA polymerase I activity
C0001056molecular_functionRNA polymerase III activity
C0003677molecular_functionDNA binding
C0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005654cellular_componentnucleoplasm
C0005666cellular_componentRNA polymerase III complex
C0005730cellular_componentnucleolus
C0005736cellular_componentRNA polymerase I complex
C0006351biological_processDNA-templated transcription
C0006360biological_processtranscription by RNA polymerase I
C0006361biological_processtranscription initiation at RNA polymerase I promoter
C0006362biological_processtranscription elongation by RNA polymerase I
C0006363biological_processtermination of RNA polymerase I transcription
C0006383biological_processtranscription by RNA polymerase III
C0006384biological_processtranscription initiation at RNA polymerase III promoter
C0006386biological_processtermination of RNA polymerase III transcription
C0042254biological_processribosome biogenesis
C0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
C0042797biological_processtRNA transcription by RNA polymerase III
C0046983molecular_functionprotein dimerization activity
C0055029cellular_componentnuclear DNA-directed RNA polymerase complex
D0000166molecular_functionnucleotide binding
D0000428cellular_componentDNA-directed RNA polymerase complex
D0001056molecular_functionRNA polymerase III activity
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005654cellular_componentnucleoplasm
D0005666cellular_componentRNA polymerase III complex
D0005829cellular_componentcytosol
D0006352biological_processDNA-templated transcription initiation
D0006383biological_processtranscription by RNA polymerase III
D0006384biological_processtranscription initiation at RNA polymerase III promoter
D0006386biological_processtermination of RNA polymerase III transcription
D0030880cellular_componentRNA polymerase complex
D0042797biological_processtRNA transcription by RNA polymerase III
D0044237biological_processcellular metabolic process
E0000428cellular_componentDNA-directed RNA polymerase complex
E0001054molecular_functionRNA polymerase I activity
E0001055molecular_functionRNA polymerase II activity
E0001056molecular_functionRNA polymerase III activity
E0001172biological_processRNA-templated transcription
E0003677molecular_functionDNA binding
E0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
E0003968molecular_functionRNA-dependent RNA polymerase activity
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005654cellular_componentnucleoplasm
E0005665cellular_componentRNA polymerase II, core complex
E0005666cellular_componentRNA polymerase III complex
E0005736cellular_componentRNA polymerase I complex
E0006351biological_processDNA-templated transcription
E0006360biological_processtranscription by RNA polymerase I
E0006361biological_processtranscription initiation at RNA polymerase I promoter
E0006362biological_processtranscription elongation by RNA polymerase I
E0006363biological_processtermination of RNA polymerase I transcription
E0006366biological_processtranscription by RNA polymerase II
E0006367biological_processtranscription initiation at RNA polymerase II promoter
E0006368biological_processtranscription elongation by RNA polymerase II
E0006383biological_processtranscription by RNA polymerase III
E0006384biological_processtranscription initiation at RNA polymerase III promoter
E0006386biological_processtermination of RNA polymerase III transcription
E0042254biological_processribosome biogenesis
E0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
E0042797biological_processtRNA transcription by RNA polymerase III
F0000428cellular_componentDNA-directed RNA polymerase complex
F0001054molecular_functionRNA polymerase I activity
F0001055molecular_functionRNA polymerase II activity
F0001056molecular_functionRNA polymerase III activity
F0001172biological_processRNA-templated transcription
F0003677molecular_functionDNA binding
F0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
F0003968molecular_functionRNA-dependent RNA polymerase activity
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005654cellular_componentnucleoplasm
F0005665cellular_componentRNA polymerase II, core complex
F0005666cellular_componentRNA polymerase III complex
F0005736cellular_componentRNA polymerase I complex
F0005737cellular_componentcytoplasm
F0006351biological_processDNA-templated transcription
F0006360biological_processtranscription by RNA polymerase I
F0006361biological_processtranscription initiation at RNA polymerase I promoter
F0006362biological_processtranscription elongation by RNA polymerase I
F0006363biological_processtermination of RNA polymerase I transcription
F0006366biological_processtranscription by RNA polymerase II
F0006367biological_processtranscription initiation at RNA polymerase II promoter
F0006368biological_processtranscription elongation by RNA polymerase II
F0006383biological_processtranscription by RNA polymerase III
F0006384biological_processtranscription initiation at RNA polymerase III promoter
F0006386biological_processtermination of RNA polymerase III transcription
F0042254biological_processribosome biogenesis
F0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
F0042797biological_processtRNA transcription by RNA polymerase III
G0000428cellular_componentDNA-directed RNA polymerase complex
G0001056molecular_functionRNA polymerase III activity
G0003677molecular_functionDNA binding
G0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
G0005515molecular_functionprotein binding
G0005634cellular_componentnucleus
G0005654cellular_componentnucleoplasm
G0005666cellular_componentRNA polymerase III complex
G0006351biological_processDNA-templated transcription
G0006352biological_processDNA-templated transcription initiation
G0006383biological_processtranscription by RNA polymerase III
G0006384biological_processtranscription initiation at RNA polymerase III promoter
G0006386biological_processtermination of RNA polymerase III transcription
G0042797biological_processtRNA transcription by RNA polymerase III
G0055029cellular_componentnuclear DNA-directed RNA polymerase complex
H0000428cellular_componentDNA-directed RNA polymerase complex
H0001054molecular_functionRNA polymerase I activity
H0001055molecular_functionRNA polymerase II activity
H0001056molecular_functionRNA polymerase III activity
H0001172biological_processRNA-templated transcription
H0003677molecular_functionDNA binding
H0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
H0003968molecular_functionRNA-dependent RNA polymerase activity
H0005515molecular_functionprotein binding
H0005634cellular_componentnucleus
H0005654cellular_componentnucleoplasm
H0005665cellular_componentRNA polymerase II, core complex
H0005666cellular_componentRNA polymerase III complex
H0005736cellular_componentRNA polymerase I complex
H0006351biological_processDNA-templated transcription
H0006360biological_processtranscription by RNA polymerase I
H0006361biological_processtranscription initiation at RNA polymerase I promoter
H0006362biological_processtranscription elongation by RNA polymerase I
H0006363biological_processtermination of RNA polymerase I transcription
H0006366biological_processtranscription by RNA polymerase II
H0006367biological_processtranscription initiation at RNA polymerase II promoter
H0006368biological_processtranscription elongation by RNA polymerase II
H0006383biological_processtranscription by RNA polymerase III
H0006384biological_processtranscription initiation at RNA polymerase III promoter
H0006386biological_processtermination of RNA polymerase III transcription
H0042254biological_processribosome biogenesis
H0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
H0042797biological_processtRNA transcription by RNA polymerase III
I0000428cellular_componentDNA-directed RNA polymerase complex
I0001056molecular_functionRNA polymerase III activity
I0003676molecular_functionnucleic acid binding
I0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
I0005634cellular_componentnucleus
I0005654cellular_componentnucleoplasm
I0005666cellular_componentRNA polymerase III complex
I0005730cellular_componentnucleolus
I0006351biological_processDNA-templated transcription
I0006383biological_processtranscription by RNA polymerase III
I0006384biological_processtranscription initiation at RNA polymerase III promoter
I0006386biological_processtermination of RNA polymerase III transcription
I0008270molecular_functionzinc ion binding
I0042797biological_processtRNA transcription by RNA polymerase III
I0046872molecular_functionmetal ion binding
I0055029cellular_componentnuclear DNA-directed RNA polymerase complex
J0000428cellular_componentDNA-directed RNA polymerase complex
J0001054molecular_functionRNA polymerase I activity
J0001055molecular_functionRNA polymerase II activity
J0001056molecular_functionRNA polymerase III activity
J0001172biological_processRNA-templated transcription
J0003677molecular_functionDNA binding
J0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
J0003968molecular_functionRNA-dependent RNA polymerase activity
J0005515molecular_functionprotein binding
J0005634cellular_componentnucleus
J0005654cellular_componentnucleoplasm
J0005665cellular_componentRNA polymerase II, core complex
J0005666cellular_componentRNA polymerase III complex
J0005730cellular_componentnucleolus
J0005736cellular_componentRNA polymerase I complex
J0006351biological_processDNA-templated transcription
J0006360biological_processtranscription by RNA polymerase I
J0006361biological_processtranscription initiation at RNA polymerase I promoter
J0006362biological_processtranscription elongation by RNA polymerase I
J0006363biological_processtermination of RNA polymerase I transcription
J0006366biological_processtranscription by RNA polymerase II
J0006367biological_processtranscription initiation at RNA polymerase II promoter
J0006368biological_processtranscription elongation by RNA polymerase II
J0006383biological_processtranscription by RNA polymerase III
J0006384biological_processtranscription initiation at RNA polymerase III promoter
J0006386biological_processtermination of RNA polymerase III transcription
J0008270molecular_functionzinc ion binding
J0042254biological_processribosome biogenesis
J0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
J0042797biological_processtRNA transcription by RNA polymerase III
J0046872molecular_functionmetal ion binding
K0000428cellular_componentDNA-directed RNA polymerase complex
K0001054molecular_functionRNA polymerase I activity
K0001056molecular_functionRNA polymerase III activity
K0003677molecular_functionDNA binding
K0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
K0005515molecular_functionprotein binding
K0005634cellular_componentnucleus
K0005654cellular_componentnucleoplasm
K0005666cellular_componentRNA polymerase III complex
K0005730cellular_componentnucleolus
K0005736cellular_componentRNA polymerase I complex
K0006351biological_processDNA-templated transcription
K0006360biological_processtranscription by RNA polymerase I
K0006361biological_processtranscription initiation at RNA polymerase I promoter
K0006362biological_processtranscription elongation by RNA polymerase I
K0006363biological_processtermination of RNA polymerase I transcription
K0006383biological_processtranscription by RNA polymerase III
K0006384biological_processtranscription initiation at RNA polymerase III promoter
K0006386biological_processtermination of RNA polymerase III transcription
K0042254biological_processribosome biogenesis
K0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
K0042797biological_processtRNA transcription by RNA polymerase III
K0046983molecular_functionprotein dimerization activity
K0055029cellular_componentnuclear DNA-directed RNA polymerase complex
L0000428cellular_componentDNA-directed RNA polymerase complex
L0001054molecular_functionRNA polymerase I activity
L0001055molecular_functionRNA polymerase II activity
L0001056molecular_functionRNA polymerase III activity
L0001172biological_processRNA-templated transcription
L0003677molecular_functionDNA binding
L0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
L0003968molecular_functionRNA-dependent RNA polymerase activity
L0005634cellular_componentnucleus
L0005654cellular_componentnucleoplasm
L0005665cellular_componentRNA polymerase II, core complex
L0005666cellular_componentRNA polymerase III complex
L0005730cellular_componentnucleolus
L0005736cellular_componentRNA polymerase I complex
L0005737cellular_componentcytoplasm
L0005777cellular_componentperoxisome
L0006351biological_processDNA-templated transcription
L0006360biological_processtranscription by RNA polymerase I
L0006361biological_processtranscription initiation at RNA polymerase I promoter
L0006362biological_processtranscription elongation by RNA polymerase I
L0006363biological_processtermination of RNA polymerase I transcription
L0006366biological_processtranscription by RNA polymerase II
L0006367biological_processtranscription initiation at RNA polymerase II promoter
L0006368biological_processtranscription elongation by RNA polymerase II
L0006383biological_processtranscription by RNA polymerase III
L0006384biological_processtranscription initiation at RNA polymerase III promoter
L0006386biological_processtermination of RNA polymerase III transcription
L0008270molecular_functionzinc ion binding
L0042254biological_processribosome biogenesis
L0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
L0042797biological_processtRNA transcription by RNA polymerase III
L0046872molecular_functionmetal ion binding
M0000428cellular_componentDNA-directed RNA polymerase complex
M0001056molecular_functionRNA polymerase III activity
M0005515molecular_functionprotein binding
M0005634cellular_componentnucleus
M0005666cellular_componentRNA polymerase III complex
M0006351biological_processDNA-templated transcription
M0006383biological_processtranscription by RNA polymerase III
M0006384biological_processtranscription initiation at RNA polymerase III promoter
M0006386biological_processtermination of RNA polymerase III transcription
M0042797biological_processtRNA transcription by RNA polymerase III
N0000428cellular_componentDNA-directed RNA polymerase complex
N0001056molecular_functionRNA polymerase III activity
N0003677molecular_functionDNA binding
N0005515molecular_functionprotein binding
N0005634cellular_componentnucleus
N0005654cellular_componentnucleoplasm
N0005666cellular_componentRNA polymerase III complex
N0006383biological_processtranscription by RNA polymerase III
N0006384biological_processtranscription initiation at RNA polymerase III promoter
N0006386biological_processtermination of RNA polymerase III transcription
N0042797biological_processtRNA transcription by RNA polymerase III
O0000428cellular_componentDNA-directed RNA polymerase complex
O0001056molecular_functionRNA polymerase III activity
O0003677molecular_functionDNA binding
O0003697molecular_functionsingle-stranded DNA binding
O0005515molecular_functionprotein binding
O0005634cellular_componentnucleus
O0005654cellular_componentnucleoplasm
O0005666cellular_componentRNA polymerase III complex
O0005737cellular_componentcytoplasm
O0006351biological_processDNA-templated transcription
O0006383biological_processtranscription by RNA polymerase III
O0006384biological_processtranscription initiation at RNA polymerase III promoter
O0006386biological_processtermination of RNA polymerase III transcription
O0042797biological_processtRNA transcription by RNA polymerase III
P0000428cellular_componentDNA-directed RNA polymerase complex
P0001056molecular_functionRNA polymerase III activity
P0005515molecular_functionprotein binding
P0005634cellular_componentnucleus
P0005654cellular_componentnucleoplasm
P0005666cellular_componentRNA polymerase III complex
P0005737cellular_componentcytoplasm
P0005739cellular_componentmitochondrion
P0006383biological_processtranscription by RNA polymerase III
P0006384biological_processtranscription initiation at RNA polymerase III promoter
P0006386biological_processtermination of RNA polymerase III transcription
P0042797biological_processtRNA transcription by RNA polymerase III
Q0000428cellular_componentDNA-directed RNA polymerase complex
Q0001056molecular_functionRNA polymerase III activity
Q0003677molecular_functionDNA binding
Q0005515molecular_functionprotein binding
Q0005634cellular_componentnucleus
Q0005654cellular_componentnucleoplasm
Q0005666cellular_componentRNA polymerase III complex
Q0006383biological_processtranscription by RNA polymerase III
Q0006384biological_processtranscription initiation at RNA polymerase III promoter
Q0006386biological_processtermination of RNA polymerase III transcription
Q0016779molecular_functionnucleotidyltransferase activity
Q0042797biological_processtRNA transcription by RNA polymerase III
R0003677molecular_functionDNA binding
R0006352biological_processDNA-templated transcription initiation
R0017025molecular_functionTBP-class protein binding
S0000126cellular_componenttranscription factor TFIIIB complex
S0000995molecular_functionRNA polymerase III general transcription initiation factor activity
S0001112biological_processDNA-templated transcription open complex formation
S0001156molecular_functionTFIIIC-class transcription factor complex binding
S0005634cellular_componentnucleus
S0005654cellular_componentnucleoplasm
S0006355biological_processregulation of DNA-templated transcription
S0006359biological_processregulation of transcription by RNA polymerase III
S0006383biological_processtranscription by RNA polymerase III
S0070898biological_processRNA polymerase III preinitiation complex assembly
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 1501
ChainResidue
ACYS67
ATHR69
ACYS70
ACYS77
AHIS80

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 1502
ChainResidue
ACYS107
ACYS110
ACYS154
ACYS157

site_idAC3
Number of Residues5
Detailsbinding site for residue ZN B 2000
ChainResidue
BCYS1095
BLYS1097
BCYS1098
BCYS1107
BCYS1110

site_idAC4
Number of Residues5
Detailsbinding site for residue ZN I 2000
ChainResidue
ICYS5
ICYS8
IASN10
ICYS26
ICYS29

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN J 2000
ChainResidue
JCYS7
JCYS10
JCYS45
JCYS46

site_idAC6
Number of Residues5
Detailsbinding site for residue ZN L 2000
ChainResidue
LCYS31
LCYS34
LCYS48
LASP50
LCYS51

site_idAC7
Number of Residues4
Detailsbinding site for residue ZN R 1001
ChainResidue
RCYS4
RCYS7
RCYS25
RCYS28

Functional Information from PROSITE/UniProt
site_idPS00351
Number of Residues50
DetailsTFIID Transcription factor TFIID repeat signature. YnPkrFaaVImRirePKttaLIFaSGKMvvtGAKseddsklAsrkyariI
ChainResidueDetails
RTYR420-ILE469
RTYR511-LEU560

site_idPS00446
Number of Residues41
DetailsRNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NAFRRimisevpsvAaeyVyffnNtSviqDEvLAhRIGLVP
ChainResidueDetails
CASN65-PRO105

site_idPS00782
Number of Residues16
DetailsTFIIB Transcription factor TFIIB repeat signature. GRrsqNVIASCLYVAC
ChainResidueDetails
RGLY119-CYS134
RGLY217-CYS232

site_idPS01030
Number of Residues26
DetailsRNA_POL_M_15KD RNA polymerases M / 15 Kd subunits signature. FCPSCNNMLlitsgdsgvytla.CrsC
ChainResidueDetails
IPHE4-CYS29

site_idPS01110
Number of Residues14
DetailsRNA_POL_H_23KD RNA polymerases H / 23 Kd subunits signature. HELVPKHirLssDE
ChainResidueDetails
EHIS147-GLU160

site_idPS01111
Number of Residues15
DetailsRNA_POL_K_14KD RNA polymerases K / 14 to 18 Kd subunits signature. TkYErARiLGtRAlQ
ChainResidueDetails
FTHR86-GLN100

site_idPS01112
Number of Residues10
DetailsRNA_POL_N_8KD RNA polymerases N / 8 Kd subunits signature. IVPVrCFSCG
ChainResidueDetails
JILE2-GLY11

site_idPS01154
Number of Residues32
DetailsRNA_POL_L_13KD RNA polymerases L / 13 to 16 Kd subunits signature. IveEdHTLgNaLryvImknpdVefcgYsipHP
ChainResidueDetails
KILE65-PRO96

site_idPS01166
Number of Residues13
DetailsRNA_POL_BETA RNA polymerases beta chain signature. GdKFSSrHGQKGV
ChainResidueDetails
BGLY909-VAL921

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:19779198
ChainResidueDetails
SSER9
AASP515
NSER138
JCYS45
JCYS46
ACYS107
ACYS110
ACYS154
AASP511
AASP513

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
ChainResidueDetails
SSER138
RCYS7
RCYS25
RCYS28

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:17287358, ECO:0007744|PubMed:19779198
ChainResidueDetails
RSER381
ICYS8
ICYS26
ICYS29

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:17287358, ECO:0007744|PubMed:17330950
ChainResidueDetails
NTHR228
NTHR232
ICYS100
ICYS103

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon