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6CIL

PRE-REACTION COMPLEX, RAG1(E962Q)/2-INTACT/INTACT 12/23RSS COMPLEX IN MN2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0004519molecular_functionendonuclease activity
A0033151biological_processV(D)J recombination
A0043565molecular_functionsequence-specific DNA binding
A0061630molecular_functionubiquitin protein ligase activity
B0003677molecular_functionDNA binding
B0005634cellular_componentnucleus
B0006310biological_processDNA recombination
C0004519molecular_functionendonuclease activity
C0033151biological_processV(D)J recombination
C0043565molecular_functionsequence-specific DNA binding
C0061630molecular_functionubiquitin protein ligase activity
D0003677molecular_functionDNA binding
D0005634cellular_componentnucleus
D0006310biological_processDNA recombination
N0003677molecular_functionDNA binding
N0005634cellular_componentnucleus
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 1101
ChainResidue
ACYS727
ACYS730
AHIS937
AHIS942

site_idAC2
Number of Residues2
Detailsbinding site for residue MN A 1102
ChainResidue
AASP600
AASP708

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN C 1101
ChainResidue
CHIS942
CCYS727
CCYS730
CHIS937

site_idAC4
Number of Residues2
Detailsbinding site for residue MN C 1102
ChainResidue
CASP600
CASP708

Functional Information from PROSITE/UniProt
site_idPS00353
Number of Residues12
DetailsHMG_BOX_1 HMG box A DNA-binding domain signature. FSKKCsERWKTM
ChainResidueDetails
NPHE41-MET52

site_idPS00435
Number of Residues11
DetailsPEROXIDASE_1 Peroxidases proximal heme-ligand signature. DTVYILGGHSL
ChainResidueDetails
BASP214-LEU224

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsSite: {"description":"Essential for DNA hairpin formation, participates in base-stacking interactions near the cleavage site"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsModified residue: {"description":"Cysteine sulfonic acid (-SO3H)","evidences":[{"source":"UniProtKB","id":"P63159","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"UniProtKB","id":"P10103","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"UniProtKB","id":"P63158","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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