6CHR

Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue MG A 701

Chain	Residue
A	A551
A	G552
A	A574
A	MG702

---

site_id	AC2
Number of Residues	5
Details	binding site for residue MG A 702

Chain	Residue
A	G552
A	C572
A	A574
A	MG701
B	A16

---

site_id	AC3
Number of Residues	3
Details	binding site for residue MG A 703

Chain	Residue
A	G1
A	C4
A	G5

---

site_id	AC4
Number of Residues	3
Details	binding site for residue MG A 704

Chain	Residue
A	A6
A	C7
A	A341

---

site_id	AC5
Number of Residues	2
Details	binding site for residue MG A 705

Chain	Residue
A	A433
A	G434

---

site_id	AC6
Number of Residues	1
Details	binding site for residue MG A 706

Chain	Residue
A	G430

---

site_id	AC7
Number of Residues	2
Details	binding site for residue MG A 707

Chain	Residue
A	U520
A	C537

---

site_id	AC8
Number of Residues	2
Details	binding site for residue MG A 708

Chain	Residue
A	C435
A	A436

---

site_id	AC9
Number of Residues	2
Details	binding site for residue MG A 709

Chain	Residue
A	A8
A	A433

---

site_id	AD1
Number of Residues	2
Details	binding site for residue MG A 710

Chain	Residue
A	G99
A	U100

---

site_id	AD2
Number of Residues	3
Details	binding site for residue MG A 711

Chain	Residue
A	G564
A	A565
A	HOH916

---

site_id	AD3
Number of Residues	3
Details	binding site for residue MG A 712

Chain	Residue
A	G509
A	U545
A	G546

---

site_id	AD4
Number of Residues	1
Details	binding site for residue MG A 713

Chain	Residue
A	A410

---

site_id	AD5
Number of Residues	1
Details	binding site for residue MG A 714

Chain	Residue
A	A303

---

site_id	AD6
Number of Residues	2
Details	binding site for residue MG A 715

Chain	Residue
A	G111
A	G112

---

site_id	AD7
Number of Residues	3
Details	binding site for residue MG A 716

Chain	Residue
A	A64
A	G65
A	A115

---

site_id	AD8
Number of Residues	1
Details	binding site for residue MG A 717

Chain	Residue
A	G114

---

site_id	AD9
Number of Residues	2
Details	binding site for residue MG A 718

Chain	Residue
A	U449
A	A450

---

site_id	AE1
Number of Residues	1
Details	binding site for residue MG A 719

Chain	Residue
A	U468

---

site_id	AE2
Number of Residues	3
Details	binding site for residue MG A 720

Chain	Residue
A	U183
A	A184
A	G304

---

site_id	AE3
Number of Residues	1
Details	binding site for residue MG A 721

Chain	Residue
A	U301

---

site_id	AE4
Number of Residues	2
Details	binding site for residue MG A 722

Chain	Residue
A	C329
A	C330

---

site_id	AE5
Number of Residues	2
Details	binding site for residue MG A 724

Chain	Residue
A	C495
A	U496

---

site_id	AE6
Number of Residues	2
Details	binding site for residue MG A 725

Chain	Residue
A	C537
A	A538

---

site_id	AE7
Number of Residues	1
Details	binding site for residue MG A 726

Chain	Residue
A	U89

---

site_id	AE8
Number of Residues	1
Details	binding site for residue MG A 728

Chain	Residue
A	U449

---

site_id	AE9
Number of Residues	3
Details	binding site for residue MG A 729

Chain	Residue
A	G421
A	A577
A	HOH857

---

site_id	AF1
Number of Residues	2
Details	binding site for residue MG A 730

Chain	Residue
A	U499
A	U500

---

site_id	AF2
Number of Residues	1
Details	binding site for residue MG A 731

Chain	Residue
A	G430

---

site_id	AF3
Number of Residues	3
Details	binding site for residue MG A 732

Chain	Residue
A	A117
A	A118
A	C150

---

site_id	AF4
Number of Residues	1
Details	binding site for residue MG A 733

Chain	Residue
A	U584

---

site_id	AF5
Number of Residues	1
Details	binding site for residue MG A 734

Chain	Residue
A	U520

---

site_id	AF6
Number of Residues	2
Details	binding site for residue MG A 735

Chain	Residue
A	U446
A	U447

---

site_id	AF7
Number of Residues	2
Details	binding site for residue MG A 736

Chain	Residue
A	G382
A	G383

---

site_id	AF8
Number of Residues	2
Details	binding site for residue MG A 737

Chain	Residue
A	A308
A	A309

---

site_id	AF9
Number of Residues	2
Details	binding site for residue MG A 738

Chain	Residue
A	A309
A	HOH912

---

site_id	AG1
Number of Residues	1
Details	binding site for residue MG A 739

Chain	Residue
A	A249

---

site_id	AG2
Number of Residues	1
Details	binding site for residue MG A 740

Chain	Residue
A	U15

---

site_id	AG3
Number of Residues	4
Details	binding site for residue SPM A 741

Chain	Residue
A	G517
A	U518
A	A519
A	A534

---

site_id	AG4
Number of Residues	1
Details	binding site for residue NA A 742

Chain	Residue
A	G174

---

site_id	AG5
Number of Residues	3
Details	binding site for residue NA A 743

Chain	Residue
A	G421
A	A551
A	A574

---

site_id	AG6
Number of Residues	2
Details	binding site for residue NA A 744

Chain	Residue
A	G18
A	HOH1013

---

site_id	AG7
Number of Residues	1
Details	binding site for residue NA A 745

Chain	Residue
A	G453

---

site_id	AG8
Number of Residues	2
Details	binding site for residue NA A 746

Chain	Residue
A	U563
A	G564

---

site_id	AG9
Number of Residues	1
Details	binding site for residue NA A 747

Chain	Residue
A	A348

---

site_id	AH1
Number of Residues	1
Details	binding site for residue NA A 748

Chain	Residue
A	U581

---

site_id	AH2
Number of Residues	2
Details	binding site for residue NA A 749

Chain	Residue
A	U582
A	C583

---

site_id	AH3
Number of Residues	2
Details	binding site for residue NA A 750

Chain	Residue
A	A462
A	G463

---

site_id	AH4
Number of Residues	6
Details	binding site for residue MG A 751

Chain	Residue
A	HOH966
A	HOH980
A	A340
A	HOH815
A	HOH886
A	HOH938

---

site_id	AH5
Number of Residues	6
Details	binding site for residue MG A 752

Chain	Residue
A	HOH829
A	HOH833
A	HOH954
A	HOH973
A	HOH974
A	HOH990

---

site_id	AH6
Number of Residues	7
Details	binding site for residue MG A 753

Chain	Residue
A	G350
A	HOH822
A	HOH840
A	HOH844
A	HOH873
A	HOH896
A	HOH928

---

site_id	AH7
Number of Residues	6
Details	binding site for residue MG A 754

Chain	Residue
A	HOH845
A	HOH887
A	HOH890
A	HOH947
A	HOH994
A	HOH1015

---

site_id	AH8
Number of Residues	6
Details	binding site for residue MG A 755

Chain	Residue
A	HOH830
A	HOH908
A	HOH925
A	HOH934
A	HOH936
A	HOH1026

---

site_id	AH9
Number of Residues	6
Details	binding site for residue MG A 756

Chain	Residue
A	HOH883
A	HOH912
A	HOH930
A	HOH975
A	HOH977
A	HOH1016

---

site_id	AI1
Number of Residues	6
Details	binding site for residue MG A 757

Chain	Residue
A	HOH803
A	HOH816
A	HOH880
A	HOH907
A	HOH951
A	HOH988

---

site_id	AI2
Number of Residues	7
Details	binding site for residue MG A 758

Chain	Residue
A	A36
A	HOH807
A	HOH814
A	HOH834
A	HOH922
A	HOH967
A	HOH1008

---

site_id	AI3
Number of Residues	6
Details	binding site for residue MG A 759

Chain	Residue
A	HOH802
A	HOH862
A	HOH865
A	HOH917
A	HOH970
A	HOH989

---

site_id	AI4
Number of Residues	6
Details	binding site for residue MG A 760

Chain	Residue
A	HOH823
A	HOH842
A	HOH856
A	HOH909
A	HOH958
A	HOH969

---

site_id	AI5
Number of Residues	6
Details	binding site for residue MG A 761

Chain	Residue
A	HOH817
A	HOH849
A	HOH923
A	HOH924
A	HOH979
A	HOH1019

---

site_id	AI6
Number of Residues	6
Details	binding site for residue MG A 762

Chain	Residue
A	HOH810
A	HOH857
A	HOH897
A	HOH903
A	HOH931
A	HOH939

---

site_id	AI7
Number of Residues	6
Details	binding site for residue MG A 763

Chain	Residue
A	HOH868
A	HOH870
A	HOH885
A	HOH918
A	HOH985
A	HOH1023

---

site_id	AI8
Number of Residues	6
Details	binding site for residue MG A 764

Chain	Residue
A	HOH804
A	HOH893
A	HOH943
A	HOH950
A	HOH976
A	HOH1007

---

site_id	AI9
Number of Residues	6
Details	binding site for residue MG A 765

Chain	Residue
A	HOH837
A	HOH851
A	HOH900
A	HOH911
A	HOH997
A	HOH999

---

site_id	AJ1
Number of Residues	6
Details	binding site for residue MG A 766

Chain	Residue
A	HOH821
A	HOH826
A	HOH869
A	HOH878
A	HOH1000
A	HOH1002

---

site_id	AJ2
Number of Residues	6
Details	binding site for residue MG A 767

Chain	Residue
A	HOH831
A	HOH864
A	HOH960
A	HOH992
A	HOH1013
A	HOH1022

---

site_id	AJ3
Number of Residues	6
Details	binding site for residue MG A 768

Chain	Residue
A	HOH858
A	HOH875
A	HOH932
A	HOH981
A	HOH1021
A	HOH1025

---

site_id	AJ4
Number of Residues	6
Details	binding site for residue MG A 769

Chain	Residue
A	HOH805
A	HOH863
A	HOH871
A	HOH874
A	HOH920
A	HOH982

---

site_id	AJ5
Number of Residues	6
Details	binding site for residue MG A 770

Chain	Residue
A	HOH801
A	HOH847
A	HOH945
A	HOH978
A	HOH983
A	HOH996

---

site_id	AJ6
Number of Residues	7
Details	binding site for residue MG A 771

Chain	Residue
A	C554
A	HOH811
A	HOH824
A	HOH879
A	HOH889
A	HOH899
A	HOH946

---

site_id	AJ7
Number of Residues	6
Details	binding site for residue MG A 772

Chain	Residue
A	HOH820
A	HOH872
A	HOH876
A	HOH882
A	HOH894
A	HOH902

---

site_id	AJ8
Number of Residues	7
Details	binding site for residue MG A 773

Chain	Residue
A	G106
A	C107
A	U108
A	HOH806
A	HOH860
A	HOH949
A	HOH984

---

site_id	AJ9
Number of Residues	7
Details	binding site for residue MG A 774

Chain	Residue
A	G555
A	HOH812
A	HOH813
A	HOH867
A	HOH888
A	HOH892
A	HOH965

---

site_id	AK1
Number of Residues	7
Details	binding site for residue MG A 775

Chain	Residue
A	A115
A	C116
A	HOH828
A	HOH835
A	HOH850
A	HOH921
A	HOH926

---

site_id	AK2
Number of Residues	7
Details	binding site for residue MG A 776

Chain	Residue
A	A458
A	HOH838
A	HOH846
A	HOH904
A	HOH906
A	HOH935
A	HOH1012

---

site_id	AK3
Number of Residues	7
Details	binding site for residue MG A 777

Chain	Residue
A	G33
A	A35
A	HOH855
A	HOH866
A	HOH884
A	HOH937
A	HOH998

---

site_id	AK4
Number of Residues	6
Details	binding site for residue MG A 778

Chain	Residue
A	HOH843
A	HOH901
A	HOH961
A	HOH1003
A	HOH1004
A	HOH1024

---

site_id	AK5
Number of Residues	6
Details	binding site for residue MG A 779

Chain	Residue
A	HOH818
A	HOH827
A	HOH861
A	HOH1001
A	HOH1005
A	HOH1020

---

site_id	AK6
Number of Residues	6
Details	binding site for residue MG A 780

Chain	Residue
A	HOH825
A	HOH927
A	HOH956
A	HOH962
A	HOH964
A	HOH1014

---

site_id	AK7
Number of Residues	6
Details	binding site for residue MG A 781

Chain	Residue
A	HOH952
A	HOH987
A	HOH991
A	HOH1027
A	HOH1028
A	HOH1030

---

site_id	AK8
Number of Residues	6
Details	binding site for residue MG A 782

Chain	Residue
A	HOH848
A	HOH953
A	HOH972
A	HOH993
A	HOH1009
A	HOH1011

---

site_id	AK9
Number of Residues	6
Details	binding site for residue MG A 783

Chain	Residue
A	HOH819
A	HOH877
A	HOH913
A	HOH933
A	HOH963
A	HOH986

---

site_id	AL1
Number of Residues	6
Details	binding site for residue MG A 784

Chain	Residue
A	HOH852
A	HOH905
A	HOH910
A	HOH941
A	HOH971
A	HOH1017

---

site_id	AL2
Number of Residues	6
Details	binding site for residue MG A 785

Chain	Residue
A	HOH919
A	HOH944
A	HOH955
A	HOH959
A	HOH1010
A	HOH1029

---

site_id	AL3
Number of Residues	6
Details	binding site for residue MG A 786

Chain	Residue
A	HOH839
A	HOH841
A	HOH854
A	HOH942
A	HOH948
A	HOH995

---

site_id	AL4
Number of Residues	6
Details	binding site for residue MG A 787

Chain	Residue
A	G564
A	HOH895
A	HOH916
A	HOH957
A	HOH968
A	HOH1018

---

site_id	AL5
Number of Residues	7
Details	binding site for residue MG A 788

Chain	Residue
A	C553
A	C570
A	G571
A	HOH836
A	HOH853
A	HOH881
A	HOH915

---

site_id	AL6
Number of Residues	6
Details	binding site for residue MG A 789

Chain	Residue
A	G493
A	HOH832
A	HOH891
A	HOH929
A	HOH940
A	HOH1006

---

site_id	AL7
Number of Residues	2
Details	binding site for residue MG B 101

Chain	Residue
A	C254
B	U10

---

site_id	AL8
Number of Residues	1
Details	binding site for residue MG B 102

Chain	Residue
B	A15

---

site_id	AL9
Number of Residues	6
Details	binding site for residue MG B 103

Chain	Residue
B	HOH201
B	HOH202
B	HOH203
B	HOH204
B	HOH205
B	HOH206

---