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6CHR

Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2013-07-12
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9795
Spacegroup nameC 2 2 21
Unit cell lengths165.015, 256.893, 137.232
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.077 - 3.700
R-factor0.2191
Rwork0.217
R-free0.25290
Structure solution methodMAD
RMSD bond length0.002
RMSD bond angle0.515
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareSHELXDE
Refinement softwarePHENIX
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]150.0003.820
High resolution limit [Å]3.7003.700
Number of reflections312002986
<I/σ(I)>15.11.21
Completeness [%]97.192.9
Redundancy3.53.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.63030.4 mM spermine, 21% 2-Methyl-2,4-pentanediol, 175 mM magnesium acetate tetrahydrate, and 90 mM MES monohydrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 303K

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PDB entries from 2024-06-26

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