6CHR
Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-07-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 165.015, 256.893, 137.232 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.077 - 3.700 |
R-factor | 0.2191 |
Rwork | 0.217 |
R-free | 0.25290 |
Structure solution method | MAD |
RMSD bond length | 0.002 |
RMSD bond angle | 0.515 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | SHELXDE |
Refinement software | PHENIX |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 150.000 | 3.820 |
High resolution limit [Å] | 3.700 | 3.700 |
Number of reflections | 31200 | 2986 |
<I/σ(I)> | 15.1 | 1.21 |
Completeness [%] | 97.1 | 92.9 |
Redundancy | 3.5 | 3.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 303 | 0.4 mM spermine, 21% 2-Methyl-2,4-pentanediol, 175 mM magnesium acetate tetrahydrate, and 90 mM MES monohydrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 303K |