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6CCH

NMR data-driven model of GTPase KRas-GMPPNP tethered to a nanodisc (E3 state)

Functional Information from GO Data
ChainGOidnamespacecontents
A0005576cellular_componentextracellular region
A0006869biological_processlipid transport
A0008289molecular_functionlipid binding
A0042157biological_processlipoprotein metabolic process
B0000139cellular_componentGolgi membrane
B0000165biological_processMAPK cascade
B0000166molecular_functionnucleotide binding
B0001889biological_processliver development
B0003924molecular_functionGTPase activity
B0003925molecular_functionG protein activity
B0005515molecular_functionprotein binding
B0005525molecular_functionGTP binding
B0005737cellular_componentcytoplasm
B0005741cellular_componentmitochondrial outer membrane
B0005789cellular_componentendoplasmic reticulum membrane
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0005925cellular_componentfocal adhesion
B0007165biological_processsignal transduction
B0007265biological_processRas protein signal transduction
B0007565biological_processfemale pregnancy
B0008284biological_processpositive regulation of cell population proliferation
B0009629biological_processresponse to gravity
B0009898cellular_componentcytoplasmic side of plasma membrane
B0010628biological_processpositive regulation of gene expression
B0012505cellular_componentendomembrane system
B0016020cellular_componentmembrane
B0016787molecular_functionhydrolase activity
B0019002molecular_functionGMP binding
B0019003molecular_functionGDP binding
B0019221biological_processcytokine-mediated signaling pathway
B0030275molecular_functionLRR domain binding
B0035900biological_processresponse to isolation stress
B0043495molecular_functionprotein-membrane adaptor activity
B0044877molecular_functionprotein-containing complex binding
B0046579biological_processpositive regulation of Ras protein signal transduction
B0051384biological_processresponse to glucocorticoid
B0051385biological_processresponse to mineralocorticoid
B0051450biological_processmyoblast proliferation
B0060038biological_processcardiac muscle cell proliferation
B2000774biological_processpositive regulation of cellular senescence
C0005576cellular_componentextracellular region
C0006869biological_processlipid transport
C0008289molecular_functionlipid binding
C0042157biological_processlipoprotein metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue PCW A 1
ChainResidue
APCW2
APCW26
A17F35
A17F36
A17F40
APCW68

site_idAC2
Number of Residues5
Detailsbinding site for residue PCW A 2
ChainResidue
APCW64
CLEU415
APCW1
APCW5
APCW17

site_idAC3
Number of Residues6
Detailsbinding site for residue PCW A 3
ChainResidue
APCW18
APCW19
APCW23
BLYS128
BGLN129
BLEU133

site_idAC4
Number of Residues1
Detailsbinding site for residue PCW A 4
ChainResidue
APCW7

site_idAC5
Number of Residues4
Detailsbinding site for residue PCW A 5
ChainResidue
APCW2
APCW17
A17F36
A17F38

site_idAC6
Number of Residues7
Detailsbinding site for residue PCW A 6
ChainResidue
APCW7
APCW11
APCW16
APCW28
APCW31
A17F39
BASP105

site_idAC7
Number of Residues5
Detailsbinding site for residue PCW A 7
ChainResidue
APCW4
APCW6
A17F33
A17F35
APCW52

site_idAC8
Number of Residues3
Detailsbinding site for residue PCW A 8
ChainResidue
ALEU316
CTYR455
CPHE459

site_idAC9
Number of Residues7
Detailsbinding site for residue PCW A 9
ChainResidue
APCW11
APCW14
APCW25
APCW28
APCW29
A17F34
APCW63

site_idAD1
Number of Residues3
Detailsbinding site for residue PCW A 10
ChainResidue
APCW12
APCW21
APCW22

site_idAD2
Number of Residues10
Detailsbinding site for residue PCW A 11
ChainResidue
APCW6
APCW9
APCW25
APCW28
A17F34
APCW63
A17F75
BLYS101
BARG102
BGLU107

site_idAD3
Number of Residues7
Detailsbinding site for residue PCW A 12
ChainResidue
APCW10
APCW21
APCW22
APCW30
A17F36
A17F37
A17F40

site_idAD4
Number of Residues6
Detailsbinding site for residue PCW A 13
ChainResidue
APCW14
APCW18
APCW23
A17F34
A17F37
APCW49

site_idAD5
Number of Residues6
Detailsbinding site for residue PCW A 14
ChainResidue
APCW9
APCW13
A17F34
A17F37
BSER136
BTYR137

site_idAD6
Number of Residues2
Detailsbinding site for residue PCW A 15
ChainResidue
APCW24
APHE214

site_idAD7
Number of Residues3
Detailsbinding site for residue PCW A 16
ChainResidue
APCW6
APCW24
A17F39

site_idAD8
Number of Residues5
Detailsbinding site for residue PCW A 17
ChainResidue
APCW2
APCW5
APCW21
A17F36
A17F38

site_idAD9
Number of Residues9
Detailsbinding site for residue PCW A 18
ChainResidue
APCW3
APCW13
APCW23
A17F37
APCW49
A17F73
A17F80
BLYS128
BASP132

site_idAE1
Number of Residues4
Detailsbinding site for residue PCW A 19
ChainResidue
APCW3
APCW23
A17F78
BTYR137

site_idAE2
Number of Residues3
Detailsbinding site for residue PCW A 20
ChainResidue
APCW24
APCW31
A17F78

site_idAE3
Number of Residues6
Detailsbinding site for residue PCW A 21
ChainResidue
APCW10
APCW12
APCW17
APCW22
A17F36
APCW51

site_idAE4
Number of Residues5
Detailsbinding site for residue PCW A 22
ChainResidue
APCW10
APCW12
APCW21
A17F36
A17F37

site_idAE5
Number of Residues9
Detailsbinding site for residue PCW A 23
ChainResidue
APCW3
APCW13
APCW18
APCW19
A17F34
A17F37
BASP132
BARG135
BSER136

site_idAE6
Number of Residues5
Detailsbinding site for residue PCW A 24
ChainResidue
APCW15
APCW16
APCW20
APCW25
A17F39

site_idAE7
Number of Residues6
Detailsbinding site for residue PCW A 25
ChainResidue
APCW9
APCW11
APCW24
APCW31
APCW66
BGLU98

site_idAE8
Number of Residues5
Detailsbinding site for residue PCW A 26
ChainResidue
APCW1
APCW28
A17F33
A17F40
APCW68

site_idAE9
Number of Residues4
Detailsbinding site for residue PCW A 27
ChainResidue
A17F37
A17F73
A17F76
CGLU466

site_idAF1
Number of Residues6
Detailsbinding site for residue PCW A 28
ChainResidue
APCW6
APCW9
APCW11
APCW26
APCW42
A17F75

site_idAF2
Number of Residues6
Detailsbinding site for residue PCW A 29
ChainResidue
APCW9
APCW31
AASP246
AVAL250
BGLU91
CTYR521

site_idAF3
Number of Residues2
Detailsbinding site for residue PCW A 30
ChainResidue
APCW12
A17F40

site_idAF4
Number of Residues4
Detailsbinding site for residue PCW A 31
ChainResidue
APCW6
APCW20
APCW25
APCW29

site_idAF5
Number of Residues4
Detailsbinding site for residue PCW A 32
ChainResidue
A17F33
A17F35
A17F38
ALEU397

site_idAF6
Number of Residues5
Detailsbinding site for residue 17F A 33
ChainResidue
APCW7
APCW26
APCW32
A17F35
APCW68

site_idAF7
Number of Residues9
Detailsbinding site for residue 17F A 34
ChainResidue
APCW9
APCW11
APCW13
APCW14
APCW23
A17F37
A17F40
A17F75
BARG135

site_idAF8
Number of Residues7
Detailsbinding site for residue 17F A 35
ChainResidue
APCW1
APCW7
APCW32
A17F33
APCW44
APCW55
APCW69

site_idAF9
Number of Residues9
Detailsbinding site for residue 17F A 36
ChainResidue
APCW1
APCW5
APCW12
APCW17
APCW21
APCW22
A17F40
APCW53
APCW70

site_idAG1
Number of Residues9
Detailsbinding site for residue 17F A 37
ChainResidue
APCW12
APCW13
APCW14
APCW18
APCW22
APCW23
APCW27
A17F34
A17F73

site_idAG2
Number of Residues7
Detailsbinding site for residue 17F A 38
ChainResidue
APCW5
APCW17
APCW32
APCW55
APCW64
ALEU371
ALEU375

site_idAG3
Number of Residues5
Detailsbinding site for residue 17F A 39
ChainResidue
APCW6
APCW16
APCW24
APCW52
APCW62

site_idAG4
Number of Residues8
Detailsbinding site for residue 17F A 40
ChainResidue
APCW1
APCW12
APCW26
APCW30
A17F34
A17F36
APCW51
APCW70

site_idAG5
Number of Residues4
Detailsbinding site for residue PCW A 41
ChainResidue
APCW52
APCW59
APCW61
A17F77

site_idAG6
Number of Residues5
Detailsbinding site for residue PCW A 42
ChainResidue
APCW28
APCW43
APCW63
APCW69
A17F75

site_idAG7
Number of Residues4
Detailsbinding site for residue PCW A 43
ChainResidue
APCW42
APCW45
APCW51
A17F75

site_idAG8
Number of Residues7
Detailsbinding site for residue PCW A 44
ChainResidue
A17F35
APCW53
APCW55
APCW59
APCW64
APCW69
A17F77

site_idAG9
Number of Residues4
Detailsbinding site for residue PCW A 45
ChainResidue
APCW43
APCW49
A17F74
A17F79

site_idAH1
Number of Residues3
Detailsbinding site for residue PCW A 46
ChainResidue
APCW47
APCW71
A17F73

site_idAH2
Number of Residues4
Detailsbinding site for residue PCW A 47
ChainResidue
APCW46
APCW57
A17F73
A17F76

site_idAH3
Number of Residues2
Detailsbinding site for residue PCW A 48
ChainResidue
APCW54
APCW60

site_idAH4
Number of Residues7
Detailsbinding site for residue PCW A 49
ChainResidue
APCW13
APCW18
APCW45
APCW57
APCW71
A17F73
A17F80

site_idAH5
Number of Residues1
Detailsbinding site for residue PCW A 50
ChainResidue
A17F78

site_idAH6
Number of Residues6
Detailsbinding site for residue PCW A 51
ChainResidue
APCW21
A17F40
APCW43
APCW56
APCW70
APCW71

site_idAH7
Number of Residues5
Detailsbinding site for residue PCW A 52
ChainResidue
APCW7
A17F39
APCW41
APCW58
APCW60

site_idAH8
Number of Residues6
Detailsbinding site for residue PCW A 53
ChainResidue
A17F36
APCW44
APCW55
APCW64
APCW68
APCW70

site_idAH9
Number of Residues2
Detailsbinding site for residue PCW A 54
ChainResidue
APCW48
CALA551

site_idAI1
Number of Residues6
Detailsbinding site for residue PCW A 55
ChainResidue
A17F35
A17F38
APCW44
APCW53
APCW64
APCW68

site_idAI2
Number of Residues2
Detailsbinding site for residue PCW A 56
ChainResidue
APCW51
APCW70

site_idAI3
Number of Residues5
Detailsbinding site for residue PCW A 57
ChainResidue
APCW47
APCW49
A17F76
A17F79
A17F80

site_idAI4
Number of Residues1
Detailsbinding site for residue PCW A 58
ChainResidue
APCW52

site_idAI5
Number of Residues4
Detailsbinding site for residue PCW A 59
ChainResidue
APCW41
APCW44
APCW61
A17F77

site_idAI6
Number of Residues5
Detailsbinding site for residue PCW A 60
ChainResidue
APCW48
APCW52
APCW62
APCW63
APCW72

site_idAI7
Number of Residues2
Detailsbinding site for residue PCW A 61
ChainResidue
APCW41
APCW59

site_idAI8
Number of Residues3
Detailsbinding site for residue PCW A 62
ChainResidue
A17F39
APCW60
APCW72

site_idAI9
Number of Residues6
Detailsbinding site for residue PCW A 63
ChainResidue
APCW9
APCW11
APCW42
APCW60
APCW67
A17F74

site_idAJ1
Number of Residues5
Detailsbinding site for residue PCW A 64
ChainResidue
APCW2
A17F38
APCW44
APCW53
APCW55

site_idAJ2
Number of Residues4
Detailsbinding site for residue PCW A 66
ChainResidue
APCW25
APCW67
A17F78
A17F79

site_idAJ3
Number of Residues4
Detailsbinding site for residue PCW A 67
ChainResidue
APCW63
APCW66
APCW69
A17F75

site_idAJ4
Number of Residues7
Detailsbinding site for residue PCW A 68
ChainResidue
APCW1
APCW26
A17F33
APCW53
APCW55
APCW69
APCW70

site_idAJ5
Number of Residues5
Detailsbinding site for residue PCW A 69
ChainResidue
A17F35
APCW42
APCW44
APCW67
APCW68

site_idAJ6
Number of Residues7
Detailsbinding site for residue PCW A 70
ChainResidue
A17F36
A17F40
APCW51
APCW53
APCW56
APCW68
APCW71

site_idAJ7
Number of Residues4
Detailsbinding site for residue PCW A 71
ChainResidue
APCW46
APCW49
APCW51
APCW70

site_idAJ8
Number of Residues3
Detailsbinding site for residue PCW A 72
ChainResidue
APCW60
APCW62
A17F78

site_idAJ9
Number of Residues7
Detailsbinding site for residue 17F A 73
ChainResidue
APCW18
APCW27
A17F37
APCW46
APCW47
APCW49
A17F76

site_idAK1
Number of Residues4
Detailsbinding site for residue 17F A 74
ChainResidue
APCW45
APCW63
A17F75
A17F79

site_idAK2
Number of Residues7
Detailsbinding site for residue 17F A 75
ChainResidue
APCW11
APCW28
A17F34
APCW42
APCW43
APCW67
A17F74

site_idAK3
Number of Residues5
Detailsbinding site for residue 17F A 76
ChainResidue
APCW27
APCW47
APCW57
A17F73
A17F80

site_idAK4
Number of Residues3
Detailsbinding site for residue 17F A 77
ChainResidue
APCW41
APCW44
APCW59

site_idAK5
Number of Residues5
Detailsbinding site for residue 17F A 78
ChainResidue
APCW19
APCW20
APCW50
APCW66
APCW72

site_idAK6
Number of Residues4
Detailsbinding site for residue 17F A 79
ChainResidue
APCW45
APCW57
APCW66
A17F74

site_idAK7
Number of Residues5
Detailsbinding site for residue 17F A 80
ChainResidue
APCW18
APCW49
APCW57
APCW65
A17F76

site_idAK8
Number of Residues20
Detailsbinding site for residue GNP B 201
ChainResidue
BVAL12
BGLY13
BVAL14
BGLY15
BLYS16
BSER17
BALA18
BPHE28
BVAL29
BASP30
BGLU31
BTYR32
BASP33
BPRO34
BTHR35
BASN116
BASP119
BLEU120
BALA146
BLYS147

site_idAK9
Number of Residues3
Detailsbinding site for residue MG B 202
ChainResidue
BTHR35
BASP38
BASP57

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues42
DetailsRepeat: {"description":"1"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues42
DetailsRepeat: {"description":"2"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues20
DetailsRepeat: {"description":"3; half-length"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues42
DetailsRepeat: {"description":"4"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues42
DetailsRepeat: {"description":"5"}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues42
DetailsRepeat: {"description":"6"}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues42
DetailsRepeat: {"description":"7"}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues42
DetailsRepeat: {"description":"8"}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues20
DetailsRepeat: {"description":"9; half-length"}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues4
DetailsModified residue: {"description":"Methionine sulfoxide","evidences":[{"source":"PubMed","id":"12576517","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues2
DetailsGlycosylation: {"description":"N-linked (Glc) (glycation) lysine","evidences":[{"source":"PubMed","id":"8261628","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues8
DetailsMotif: {"description":"Effector region"}
ChainResidueDetails

site_idSWS_FT_FI13
Number of Residues18
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22431598","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22566140","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34380736","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"35522713","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI14
Number of Residues1
DetailsModified residue: {"description":"N-acetylmethionine; in GTPase KRas; alternate","evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"FEB-2008","submissionDatabase":"UniProtKB","authors":["Bienvenut W.V.","Calvo F.","Kolch W."]}}]}
ChainResidueDetails

site_idSWS_FT_FI15
Number of Residues1
DetailsModified residue: {"description":"N-acetylthreonine; in GTPase KRas, N-terminally processed","evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"FEB-2008","submissionDatabase":"UniProtKB","authors":["Bienvenut W.V.","Calvo F.","Kolch W."]}}]}
ChainResidueDetails

site_idSWS_FT_FI16
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"22711838","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI17
Number of Residues1
DetailsModified residue: {"description":"Cysteine methyl ester","evidences":[{"source":"PubMed","id":"27791178","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5TAR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TB5","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI18
Number of Residues1
DetailsLipidation: {"description":"S-palmitoyl cysteine","evidences":[{"source":"PubMed","id":"29239724","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI19
Number of Residues1
DetailsLipidation: {"description":"N6-palmitoyl lysine","evidences":[{"source":"PubMed","id":"29239724","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI20
Number of Residues2
DetailsLipidation: {"description":"N6-palmitoyl lysine","evidences":[{"source":"PubMed","id":"29239724","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI21
Number of Residues1
DetailsLipidation: {"description":"S-farnesyl cysteine","evidences":[{"source":"PubMed","id":"27791178","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24415755","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"5TAR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TB5","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI22
Number of Residues1
DetailsGlycosylation: {"description":"(Microbial infection) O-linked (Glc) threonine; by P.sordellii toxin TcsL","evidences":[{"source":"PubMed","id":"19744486","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI23
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"30442762","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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