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6CBO

X-ray structure of GenB1 from micromonospora echinospora in complex with neamine and PLP (as the external aldimine)

Functional Information from GO Data
ChainGOidnamespacecontents
A0008483molecular_functiontransaminase activity
A0030170molecular_functionpyridoxal phosphate binding
A0046872molecular_functionmetal ion binding
B0008483molecular_functiontransaminase activity
B0030170molecular_functionpyridoxal phosphate binding
B0046872molecular_functionmetal ion binding
C0008483molecular_functiontransaminase activity
C0030170molecular_functionpyridoxal phosphate binding
C0046872molecular_functionmetal ion binding
D0008483molecular_functiontransaminase activity
D0030170molecular_functionpyridoxal phosphate binding
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue MPO A 501
ChainResidue
AGLY8
ALEU11
AALA12
AGLN13
APRO15
AARG19
BTRP81

site_idAC2
Number of Residues6
Detailsbinding site for residue EDO A 502
ChainResidue
AHOH690
AHOH741
AHOH883
CGLU164
ASER125
AHOH648

site_idAC3
Number of Residues28
Detailsbinding site for residue DOW A 503
ChainResidue
ATHR16
ATHR106
AGLY107
ATHR108
ATYR132
AHIS133
AGLY134
ASER178
AASP206
AVAL208
ALYS209
ALYS232
APHE342
AASP345
AASN346
AGLY392
AALA393
AASP395
AHOH602
AHOH614
AHOH630
AHOH659
AHOH662
AHOH664
AHOH715
AHOH856
BPHE258
BTHR259

site_idAC4
Number of Residues10
Detailsbinding site for residue MPO B 501
ChainResidue
ATRP81
BGLY8
BLEU11
BALA12
BGLN13
BGLU14
BPRO15
BARG19
BHOH792
BHOH881

site_idAC5
Number of Residues6
Detailsbinding site for residue EDO B 502
ChainResidue
BARG122
BARG124
BPRO169
BGLU170
BALA199
BASP200

site_idAC6
Number of Residues28
Detailsbinding site for residue DOW B 503
ChainResidue
APHE258
ATHR259
AHOH740
AHOH777
BTHR16
BTHR106
BGLY107
BTHR108
BTYR132
BHIS133
BGLY134
BSER178
BASP206
BVAL208
BLYS209
BLYS232
BPHE342
BASP345
BASN346
BGLY392
BALA393
BASP395
BHOH608
BHOH662
BHOH703
BHOH709
BHOH716
BHOH760

site_idAC7
Number of Residues10
Detailsbinding site for residue MPO C 501
ChainResidue
CGLY8
CLEU11
CALA12
CGLN13
CGLU14
CPRO15
CARG19
CARG24
CHOH889
DTRP81

site_idAC8
Number of Residues6
Detailsbinding site for residue EDO C 502
ChainResidue
CALA199
CASP200
CARG122
CARG124
CPRO169
CGLU170

site_idAC9
Number of Residues27
Detailsbinding site for residue DOW C 503
ChainResidue
CTHR16
CTHR106
CGLY107
CTHR108
CTYR132
CHIS133
CGLY134
CSER178
CASP206
CVAL208
CLYS209
CLYS232
CPHE342
CASP345
CASN346
CGLY392
CALA393
CASP395
CHOH603
CHOH651
CHOH663
CHOH707
CHOH748
CHOH754
CHOH769
DPHE258
DTHR259

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO D 501
ChainResidue
BGLU164
DSER125
DHOH617
DHOH735
DHOH768

site_idAD2
Number of Residues25
Detailsbinding site for residue DOW D 502
ChainResidue
CPHE258
CTHR259
DTHR16
DTHR106
DGLY107
DTHR108
DTYR132
DHIS133
DGLY134
DSER178
DASP206
DVAL208
DLYS209
DLYS232
DPHE342
DASP345
DASN346
DGLY392
DALA393
DASP395
DHOH641
DHOH651
DHOH716
DHOH750
DHOH778

site_idAD3
Number of Residues5
Detailsbinding site for residue SO4 D 503
ChainResidue
CTRP81
DGLN13
DPRO15
DARG19
DHOH633

site_idAD4
Number of Residues4
Detailsbinding site for residue SO4 D 504
ChainResidue
DARG122
DPRO202
DHOH621
DHOH678

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PDB entries from 2024-06-12

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