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6CBM

x-ray structure of NeoB from streptomyces fradiae in complex with PLP and neomycin (as the external aldimine) at pH 9

Functional Information from GO Data
ChainGOidnamespacecontents
A0008483molecular_functiontransaminase activity
A0009058biological_processbiosynthetic process
A0017000biological_processantibiotic biosynthetic process
A0030170molecular_functionpyridoxal phosphate binding
A1901158biological_processneomycin biosynthetic process
B0008483molecular_functiontransaminase activity
B0009058biological_processbiosynthetic process
B0017000biological_processantibiotic biosynthetic process
B0030170molecular_functionpyridoxal phosphate binding
B1901158biological_processneomycin biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues30
Detailsbinding site for residue OZY A 501
ChainResidue
ATHR13
AVAL206
ALYS207
ALYS231
AASP344
AASN391
AVAL392
AASP394
AHOH610
AHOH644
AHOH661
AARG48
AHOH663
AHOH675
AHOH688
AHOH690
AHOH692
AHOH774
AHOH859
BGLU254
BSER256
BPHE257
AGLY104
BTHR258
ATHR105
ATYR129
AHIS130
AGLY131
ASER176
AASP204

site_idAC2
Number of Residues6
Detailsbinding site for residue EDO A 502
ChainResidue
AASP156
AARG401
AASP402
AARG403
ATHR406
AHOH748

site_idAC3
Number of Residues33
Detailsbinding site for residue OZY B 501
ChainResidue
AGLU254
ASER256
APHE257
ATHR258
AHOH739
AHOH925
BTHR13
BARG48
BGLY104
BTHR105
BTYR129
BHIS130
BGLY131
BSER176
BASP204
BVAL206
BLYS207
BLYS231
BTYR341
BASP344
BASN391
BVAL392
BASP394
BHOH604
BHOH605
BHOH633
BHOH641
BHOH687
BHOH691
BHOH720
BHOH744
BHOH748
BHOH836

site_idAC4
Number of Residues12
Detailsbinding site for residue EDO B 502
ChainResidue
AARG102
ASER103
AALA106
ATYR132
BARG102
BSER103
BALA106
BTYR132
BHOH635
BHOH737
BHOH754
BHOH789

site_idAC5
Number of Residues4
Detailsbinding site for residue CL B 503
ChainResidue
BPHE155
BLEU157
BTRP186
BHOH859

site_idAC6
Number of Residues2
Detailsbinding site for residue CL B 504
ChainResidue
BALA384
BARG387

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000250
ChainResidueDetails
ALYS231
BLYS231

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PDB entries from 2024-06-12

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