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6C2Z

Crystal Structures of Cystathionine beta-Synthase from Saccharomyces cerevisiae: the Structure of the PLP-Aminoacrylate Intermediate

Functional Information from GO Data
ChainGOidnamespacecontents
A0004122molecular_functioncystathionine beta-synthase activity
A0005737cellular_componentcytoplasm
A0006535biological_processcysteine biosynthetic process from serine
A0019343biological_processcysteine biosynthetic process via cystathionine
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue P1T A 501
ChainResidue
ALYS53
AGLY198
AGLY199
ATHR200
AGLY245
AILE246
ASER289
APRO318
AASP319
AHOH657
AHOH702
ATHR81
AHOH706
AHOH779
ASER82
AASN84
ATHR85
AGLN157
AALA195
AGLY196
ATHR197

site_idAC2
Number of Residues7
Detailsbinding site for residue CA A 502
ChainResidue
AASN183
AASP186
AASN187
AGLN253
AHOH867
AHOH874
AHOH880

site_idAC3
Number of Residues2
Detailsbinding site for residue NA A 503
ChainResidue
AGLY120
AHOH770

site_idAC4
Number of Residues3
Detailsbinding site for residue CL A 504
ChainResidue
ALYS107
AMET108
AGLY245

site_idAC5
Number of Residues12
Detailsbinding site for residue PEG A 505
ChainResidue
ALEU45
ALEU45
ATYR46
ATYR46
AASN47
APRO48
AGLY49
AGLY50
ALEU285
AARG322
AHOH820
AHOH820

site_idAC6
Number of Residues6
Detailsbinding site for residue PEG A 506
ChainResidue
AMET161
AGLU165
ATYR168
ALYS206
AHOH612
AHOH620

site_idAC7
Number of Residues4
Detailsbinding site for residue PGE A 507
ChainResidue
ASER59
AMET162
APHE169
AHOH865

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 508
ChainResidue
AARG189
ALYS214
AGLN216
ATYR300
ALEU307
AHOH607
AHOH624

site_idAC9
Number of Residues6
Detailsbinding site for residue EDO A 509
ChainResidue
ALYS242
ATRP333
AHOH602
AHOH645
AHOH720
AHOH813

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO A 510
ChainResidue
AGLU306
ATHR308
AASP311
AHOH636
AHOH864

site_idAD2
Number of Residues8
Detailsbinding site for residue EDO A 511
ChainResidue
APHE185
AASP186
ALEU188
AARG189
AASN212
AILE215
AHOH607
AHOH608

site_idAD3
Number of Residues5
Detailsbinding site for residue EDO A 512
ChainResidue
APHE223
ALYS235
ATHR236
AHOH625
AHOH649

site_idAD4
Number of Residues4
Detailsbinding site for residue EDO A 513
ChainResidue
AILE226
APHE250
AVAL251
AHOH623

site_idAD5
Number of Residues4
Detailsbinding site for residue EDO A 514
ChainResidue
APRO305
APRO305
AHOH658
AHOH673

Functional Information from PROSITE/UniProt
site_idPS00901
Number of Residues19
DetailsCYS_SYNTHASE Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. KlElyn.PGgSIKdRiAksM
ChainResidueDetails
ALYS42-MET60

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASN84
AGLY196
ASER289

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000250
ChainResidueDetails
ALYS53

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18407956
ChainResidueDetails
ASER134

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:19779198
ChainResidueDetails
ASER350

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PDB entries from 2024-07-31

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