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6BP4

Structure of the S. pombe Clr4 catalytic domain bound to SAM

Functional Information from GO Data
ChainGOidnamespacecontents
A0005634cellular_componentnucleus
A0008270molecular_functionzinc ion binding
A0042054molecular_functionhistone methyltransferase activity
A0046974molecular_functionhistone H3K9 methyltransferase activity
B0005634cellular_componentnucleus
B0008270molecular_functionzinc ion binding
B0042054molecular_functionhistone methyltransferase activity
B0046974molecular_functionhistone H3K9 methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN B 501
ChainResidue
BCYS412
BCYS477
BCYS479
BCYS484

site_idAC2
Number of Residues5
Detailsbinding site for residue ZN B 502
ChainResidue
BCYS260
BCYS278
BCYS307
BCYS311
BZN504

site_idAC3
Number of Residues5
Detailsbinding site for residue ZN B 503
ChainResidue
BCYS268
BCYS307
BCYS313
BCYS317
BZN504

site_idAC4
Number of Residues6
Detailsbinding site for residue ZN B 504
ChainResidue
BCYS260
BCYS262
BCYS268
BCYS276
BZN502
BZN503

site_idAC5
Number of Residues14
Detailsbinding site for residue SAM B 505
ChainResidue
BGLY339
BTRP340
BTYR381
BARG406
BASN409
BHIS410
BTYR451
BARG475
BGLN476
BCYS477
BLYS478
BLEU488
BGLY490
BHOH610

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN A 501
ChainResidue
ACYS412
ACYS477
ACYS479
ACYS484

site_idAC7
Number of Residues5
Detailsbinding site for residue ZN A 502
ChainResidue
ACYS260
ACYS262
ACYS268
ACYS276
AZN503

site_idAC8
Number of Residues6
Detailsbinding site for residue ZN A 503
ChainResidue
ACYS260
ACYS278
ACYS307
ACYS311
AZN502
AZN504

site_idAC9
Number of Residues5
Detailsbinding site for residue ZN A 504
ChainResidue
ACYS268
ACYS307
ACYS313
ACYS317
AZN503

site_idAD1
Number of Residues12
Detailsbinding site for residue SAM A 505
ChainResidue
AGLY339
ATRP340
AILE379
ATYR381
AARG406
AASN409
AHIS410
AARG475
AGLN476
ACYS477
ALYS478
ALEU488

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues18
DetailsBINDING: BINDING => ECO:0000269|PubMed:12389037, ECO:0000269|PubMed:30051891
ChainResidueDetails
BCYS260
ACYS260
ACYS262
ACYS268
ACYS276
ACYS278
ACYS307
ACYS311
ACYS313
ACYS317
BCYS262
BCYS268
BCYS276
BCYS278
BCYS307
BCYS311
BCYS313
BCYS317

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:30051891
ChainResidueDetails
BLYS338
ACYS477
ACYS479
ACYS484
BPHE407
BCYS412
BCYS477
BCYS479
BCYS484
ALYS338
APHE407
ACYS412

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00190
ChainResidueDetails
BTYR381
BARG406
ATYR381
AARG406

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N6-methyllysine; by autocatalysis; alternate => ECO:0000269|PubMed:30051891
ChainResidueDetails
BLYS455
ALYS455

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: N6-methyllysine => ECO:0000269|PubMed:30051891
ChainResidueDetails
BLYS464
ALYS464

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PDB entries from 2024-11-13

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