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6BFY

Crystal structure of enolase from Escherichia coli with bound 2-phosphoglycerate substrate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000015cellular_componentphosphopyruvate hydratase complex
A0000287molecular_functionmagnesium ion binding
A0004634molecular_functionphosphopyruvate hydratase activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005856cellular_componentcytoskeleton
A0006096biological_processglycolytic process
A0006396biological_processRNA processing
A0006401biological_processRNA catabolic process
A0009986cellular_componentcell surface
A0016020cellular_componentmembrane
A0016829molecular_functionlyase activity
A0042802molecular_functionidentical protein binding
A0042803molecular_functionprotein homodimerization activity
A0046872molecular_functionmetal ion binding
A1990061cellular_componentbacterial degradosome
B0000015cellular_componentphosphopyruvate hydratase complex
B0000287molecular_functionmagnesium ion binding
B0004634molecular_functionphosphopyruvate hydratase activity
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0005856cellular_componentcytoskeleton
B0006096biological_processglycolytic process
B0006396biological_processRNA processing
B0006401biological_processRNA catabolic process
B0009986cellular_componentcell surface
B0016020cellular_componentmembrane
B0016829molecular_functionlyase activity
B0042802molecular_functionidentical protein binding
B0042803molecular_functionprotein homodimerization activity
B0046872molecular_functionmetal ion binding
B1990061cellular_componentbacterial degradosome
C0000015cellular_componentphosphopyruvate hydratase complex
C0000287molecular_functionmagnesium ion binding
C0004634molecular_functionphosphopyruvate hydratase activity
C0005515molecular_functionprotein binding
C0005576cellular_componentextracellular region
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0005856cellular_componentcytoskeleton
C0006096biological_processglycolytic process
C0006396biological_processRNA processing
C0006401biological_processRNA catabolic process
C0009986cellular_componentcell surface
C0016020cellular_componentmembrane
C0016829molecular_functionlyase activity
C0042802molecular_functionidentical protein binding
C0042803molecular_functionprotein homodimerization activity
C0046872molecular_functionmetal ion binding
C1990061cellular_componentbacterial degradosome
D0000015cellular_componentphosphopyruvate hydratase complex
D0000287molecular_functionmagnesium ion binding
D0004634molecular_functionphosphopyruvate hydratase activity
D0005515molecular_functionprotein binding
D0005576cellular_componentextracellular region
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0005856cellular_componentcytoskeleton
D0006096biological_processglycolytic process
D0006396biological_processRNA processing
D0006401biological_processRNA catabolic process
D0009986cellular_componentcell surface
D0016020cellular_componentmembrane
D0016829molecular_functionlyase activity
D0042802molecular_functionidentical protein binding
D0042803molecular_functionprotein homodimerization activity
D0046872molecular_functionmetal ion binding
D1990061cellular_componentbacterial degradosome
E0000015cellular_componentphosphopyruvate hydratase complex
E0000287molecular_functionmagnesium ion binding
E0004634molecular_functionphosphopyruvate hydratase activity
E0005515molecular_functionprotein binding
E0005576cellular_componentextracellular region
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0005856cellular_componentcytoskeleton
E0006096biological_processglycolytic process
E0006396biological_processRNA processing
E0006401biological_processRNA catabolic process
E0009986cellular_componentcell surface
E0016020cellular_componentmembrane
E0016829molecular_functionlyase activity
E0042802molecular_functionidentical protein binding
E0042803molecular_functionprotein homodimerization activity
E0046872molecular_functionmetal ion binding
E1990061cellular_componentbacterial degradosome
F0000015cellular_componentphosphopyruvate hydratase complex
F0000287molecular_functionmagnesium ion binding
F0004634molecular_functionphosphopyruvate hydratase activity
F0005515molecular_functionprotein binding
F0005576cellular_componentextracellular region
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0005856cellular_componentcytoskeleton
F0006096biological_processglycolytic process
F0006396biological_processRNA processing
F0006401biological_processRNA catabolic process
F0009986cellular_componentcell surface
F0016020cellular_componentmembrane
F0016829molecular_functionlyase activity
F0042802molecular_functionidentical protein binding
F0042803molecular_functionprotein homodimerization activity
F0046872molecular_functionmetal ion binding
F1990061cellular_componentbacterial degradosome
Functional Information from PDB Data
site_idAC1
Number of Residues20
Detailsbinding site for residue 2PG A 501
ChainResidue
AGLY39
AASP316
ALEU339
ALYS341
AHIS369
AARG370
ASER371
ALYS392
AMG502
AMG503
AHOH603
AALA40
AHOH719
ASER41
AHIS158
AGLN166
AGLU167
AGLU208
AASP245
AGLU289

site_idAC2
Number of Residues4
Detailsbinding site for residue MG A 502
ChainResidue
ASER41
A2PG501
AHOH603
AHOH719

site_idAC3
Number of Residues7
Detailsbinding site for residue MG A 503
ChainResidue
AASP245
AALA247
AGLU289
AASP290
AASP316
A2PG501
AHOH719

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 504
ChainResidue
ALYS179
AARG183
AHOH610
AHOH709
BARG57

site_idAC5
Number of Residues5
Detailsbinding site for residue SO4 A 505
ChainResidue
ATHR99
AGLU100
AASN101
ASER103
AHOH606

site_idAC6
Number of Residues4
Detailsbinding site for residue SO4 A 506
ChainResidue
AARG15
AASN17
AHOH708
BHIS190

site_idAC7
Number of Residues3
Detailsbinding site for residue SO4 A 507
ChainResidue
ALYS119
AALA377
ATHR378

site_idAC8
Number of Residues2
Detailsbinding site for residue SO4 A 508
ChainResidue
AASN202
AASN214

site_idAC9
Number of Residues20
Detailsbinding site for residue 2PG B 501
ChainResidue
BGLY39
BALA40
BSER41
BHIS158
BGLN166
BGLU167
BGLU208
BASP245
BGLU289
BASP316
BLEU339
BLYS341
BHIS369
BARG370
BSER371
BLYS392
BMG502
BMG503
BHOH624
BHOH657

site_idAD1
Number of Residues4
Detailsbinding site for residue MG B 502
ChainResidue
BSER41
B2PG501
BHOH624
BHOH657

site_idAD2
Number of Residues7
Detailsbinding site for residue MG B 503
ChainResidue
BASP245
BALA247
BGLU289
BASP290
BASP316
B2PG501
BHOH624

site_idAD3
Number of Residues4
Detailsbinding site for residue SO4 B 504
ChainResidue
BILE427
BLYS428
BGLY429
BGLN430

site_idAD4
Number of Residues5
Detailsbinding site for residue SO4 B 505
ChainResidue
AHIS190
BARG15
BASN17
BLYS61
BHOH653

site_idAD5
Number of Residues5
Detailsbinding site for residue SO4 B 506
ChainResidue
AARG57
BGLU180
BARG183
BHOH602
BHOH634

site_idAD6
Number of Residues3
Detailsbinding site for residue SO4 B 507
ChainResidue
BASN202
BPRO213
BASN214

site_idAD7
Number of Residues5
Detailsbinding site for residue SO4 B 508
ChainResidue
BGLU100
BASN101
BSER103
BHOH753
BTHR99

site_idAD8
Number of Residues20
Detailsbinding site for residue 2PG C 501
ChainResidue
CGLY39
CALA40
CSER41
CHIS158
CGLN166
CGLU167
CGLU208
CASP245
CGLU289
CASP316
CLEU339
CLYS341
CHIS369
CARG370
CSER371
CLYS392
CMG502
CMG503
CHOH643
CHOH732

site_idAD9
Number of Residues4
Detailsbinding site for residue MG C 502
ChainResidue
CSER41
C2PG501
CHOH643
CHOH732

site_idAE1
Number of Residues7
Detailsbinding site for residue MG C 503
ChainResidue
CASP245
CALA247
CGLU289
CASP290
CASP316
C2PG501
CHOH732

site_idAE2
Number of Residues4
Detailsbinding site for residue SO4 C 504
ChainResidue
CLYS179
CARG183
CHOH606
DARG57

site_idAE3
Number of Residues5
Detailsbinding site for residue SO4 C 505
ChainResidue
EARG57
FLYS179
FGLU180
FARG183
FHOH634

site_idAE4
Number of Residues5
Detailsbinding site for residue SO4 C 506
ChainResidue
CARG15
CASN17
CLYS61
CHOH710
DHIS190

site_idAE5
Number of Residues5
Detailsbinding site for residue SO4 C 507
ChainResidue
CHIS190
CHOH775
DARG15
DASN17
DHOH999

site_idAE6
Number of Residues6
Detailsbinding site for residue SO4 C 508
ChainResidue
CGLY200
CMET201
CASN202
CPRO213
CASN214
CHOH677

site_idAE7
Number of Residues19
Detailsbinding site for residue 2PG F 501
ChainResidue
FGLY39
FALA40
FSER41
FHIS158
FGLN166
FGLU167
FGLU208
FASP245
FGLU289
FASP316
FLEU339
FLYS341
FHIS369
FARG370
FSER371
FLYS392
FMG502
FMG503
FHOH642

site_idAE8
Number of Residues3
Detailsbinding site for residue MG F 502
ChainResidue
FSER41
F2PG501
FHOH642

site_idAE9
Number of Residues7
Detailsbinding site for residue MG F 503
ChainResidue
FASP245
FALA247
FGLU289
FASP290
FASP316
F2PG501
FHOH642

site_idAF1
Number of Residues4
Detailsbinding site for residue SO4 F 504
ChainResidue
FTHR99
FGLU100
FASN101
FSER103

site_idAF2
Number of Residues7
Detailsbinding site for residue GOL F 505
ChainResidue
AARG-3
BARG-3
CARG-3
DARG-3
EGLN-6
FGLN-6
FHOH606

site_idAF3
Number of Residues5
Detailsbinding site for residue SO4 D 801
ChainResidue
CARG57
DLYS179
DGLU180
DARG183
DHOH919

site_idAF4
Number of Residues19
Detailsbinding site for residue 2PG D 802
ChainResidue
DGLY39
DALA40
DSER41
DHIS158
DGLN166
DGLU167
DGLU208
DASP245
DGLU289
DASP316
DLEU339
DLYS341
DHIS369
DARG370
DSER371
DLYS392
DMG803
DMG804
DHOH938

site_idAF5
Number of Residues4
Detailsbinding site for residue MG D 803
ChainResidue
DSER41
D2PG802
DHOH903
DHOH938

site_idAF6
Number of Residues7
Detailsbinding site for residue MG D 804
ChainResidue
DASP245
DALA247
DGLU289
DASP290
DASP316
D2PG802
DHOH938

site_idAF7
Number of Residues4
Detailsbinding site for residue SO4 D 805
ChainResidue
DLYS119
DALA377
DTHR378
DHOH948

site_idAF8
Number of Residues9
Detailsbinding site for residue GOL D 806
ChainResidue
AGLN-6
BGLN-6
CARG-3
DGLY-4
DARG-3
DHOH937
EARG-3
FGLY-4
FARG-3

site_idAF9
Number of Residues3
Detailsbinding site for residue SO4 E 501
ChainResidue
EGLU180
EARG183
FARG57

site_idAG1
Number of Residues20
Detailsbinding site for residue 2PG E 502
ChainResidue
EGLY39
EALA40
ESER41
EHIS158
EGLN166
EGLU167
EGLU208
EASP245
EGLU289
EASP316
ELEU339
ELYS341
EHIS369
EARG370
ESER371
ELYS392
EMG503
EMG504
EHOH621
EHOH675

site_idAG2
Number of Residues4
Detailsbinding site for residue MG E 503
ChainResidue
ESER41
E2PG502
EHOH621
EHOH675

site_idAG3
Number of Residues7
Detailsbinding site for residue MG E 504
ChainResidue
EASP245
EALA247
EGLU289
EASP290
EASP316
E2PG502
EHOH675

site_idAG4
Number of Residues5
Detailsbinding site for residue SO4 E 505
ChainResidue
EARG15
EASN17
EHOH663
EHOH730
FHIS190

site_idAG5
Number of Residues6
Detailsbinding site for residue SO4 E 506
ChainResidue
CLYS253
ETHR99
EGLU100
EASN101
ESER103
EHOH610

site_idAG6
Number of Residues3
Detailsbinding site for residue SO4 E 507
ChainResidue
EHIS190
FARG15
FASN17

site_idAG7
Number of Residues8
Detailsbinding site for residue GOL E 508
ChainResidue
AARG-3
BARG-3
CGLN-6
DGLN-6
EGLY-4
EARG-3
EHOH630
FARG-3

Functional Information from PROSITE/UniProt
site_idPS00164
Number of Residues14
DetailsENOLASE Enolase signature. ILIKfNQIGSLTET
ChainResidueDetails
AILE338-THR351

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: Proton donor => ECO:0000255|HAMAP-Rule:MF_00318, ECO:0000269|PubMed:15003462
ChainResidueDetails
AGLU208
BGLU208
CGLU208
FGLU208
DGLU208
EGLU208

site_idSWS_FT_FI2
Number of Residues6
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_00318, ECO:0000269|PubMed:15003462
ChainResidueDetails
ALYS341
BLYS341
CLYS341
FLYS341
DLYS341
ELYS341

site_idSWS_FT_FI3
Number of Residues30
DetailsBINDING: BINDING => ECO:0007744|PDB:6BFZ
ChainResidueDetails
AGLN166
CLYS341
CARG370
CSER371
FGLN166
FLYS341
FARG370
DARG370
ALYS341
DSER371
EGLN166
ELYS341
EARG370
ESER371
AALA40
BALA40
CALA40
FALA40
DALA40
AARG370
EALA40
ASER371
BGLN166
BLYS341
BARG370
BSER371
CGLN166
FSER371
DGLN166
DLYS341

site_idSWS_FT_FI4
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00318, ECO:0000269|PubMed:11676541, ECO:0000269|PubMed:16516921, ECO:0000269|PubMed:20823555, ECO:0007744|PDB:1E9I, ECO:0007744|PDB:2FYM, ECO:0007744|PDB:3H8A, ECO:0007744|PDB:6BFY, ECO:0007744|PDB:6BFZ
ChainResidueDetails
AASP245
BASP245
CASP245
FASP245
DASP245
EASP245

site_idSWS_FT_FI5
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00318, ECO:0000269|PubMed:11676541, ECO:0000269|PubMed:20823555, ECO:0000269|PubMed:30714720, ECO:0007744|PDB:1E9I, ECO:0007744|PDB:2FYM, ECO:0007744|PDB:3H8A, ECO:0007744|PDB:6BFY, ECO:0007744|PDB:6BFZ
ChainResidueDetails
AGLU289
BGLU289
CGLU289
FGLU289
DGLU289
EGLU289

site_idSWS_FT_FI6
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00318, ECO:0000269|PubMed:11676541, ECO:0000269|PubMed:16516921, ECO:0000269|PubMed:20823555, ECO:0007744|PDB:1E9I, ECO:0007744|PDB:2FYM, ECO:0007744|PDB:6BFY, ECO:0007744|PDB:6BFZ
ChainResidueDetails
AASP316
BASP316
CASP316
FASP316
DASP316
EASP316

site_idSWS_FT_FI7
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00318, ECO:0007744|PDB:6BFY, ECO:0007744|PDB:6BFZ
ChainResidueDetails
ALYS392
BLYS392
CLYS392
FLYS392
DLYS392
ELYS392

site_idSWS_FT_FI8
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:30714720, ECO:0007744|PDB:6BFY
ChainResidueDetails
ASER41
BSER41
CSER41
FSER41
DSER41
ESER41

site_idSWS_FT_FI9
Number of Residues12
DetailsBINDING: BINDING => ECO:0007744|PDB:6BFY
ChainResidueDetails
AHIS158
DGLU208
EHIS158
EGLU208
AGLU208
BHIS158
BGLU208
CHIS158
CGLU208
FHIS158
FGLU208
DHIS158

site_idSWS_FT_FI10
Number of Residues6
DetailsBINDING: BINDING => ECO:0007744|PDB:6BFY, ECO:0007744|PDB:6BFZ
ChainResidueDetails
AGLU167
BGLU167
CGLU167
FGLU167
DGLU167
EGLU167

site_idSWS_FT_FI11
Number of Residues18
DetailsSITE: Interaction with RNase E => ECO:0000269|PubMed:16516921, ECO:0000269|PubMed:20823555
ChainResidueDetails
ALYS119
FLYS119
FGLU375
FGLN407
DLYS119
DGLU375
DGLN407
ELYS119
EGLU375
EGLN407
AGLU375
AGLN407
BLYS119
BGLU375
BGLN407
CLYS119
CGLU375
CGLN407

site_idSWS_FT_FI12
Number of Residues6
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:18723842
ChainResidueDetails
ALYS256
BLYS256
CLYS256
FLYS256
DLYS256
ELYS256

site_idSWS_FT_FI13
Number of Residues6
DetailsMOD_RES: N6-(2-hydroxyisobutyryl)lysine => ECO:0000269|PubMed:31328167
ChainResidueDetails
ALYS341
BLYS341
CLYS341
FLYS341
DLYS341
ELYS341

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PDB entries from 2024-06-12

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