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6BDO

Structure of bacterial type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed with a quinone inhibitor HQNO at 2.8A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
A0016491molecular_functionoxidoreductase activity
A0019646biological_processaerobic electron transport chain
B0000166molecular_functionnucleotide binding
B0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
B0016491molecular_functionoxidoreductase activity
B0019646biological_processaerobic electron transport chain
C0000166molecular_functionnucleotide binding
C0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
C0016491molecular_functionoxidoreductase activity
C0019646biological_processaerobic electron transport chain
D0000166molecular_functionnucleotide binding
D0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
D0016491molecular_functionoxidoreductase activity
D0019646biological_processaerobic electron transport chain
Functional Information from PDB Data
site_idAC1
Number of Residues30
Detailsbinding site for residue FAD B 601
ChainResidue
BGLY10
BASP79
BTHR80
BVAL81
BLEU107
BGLY108
BILE126
BPHE165
BTHR166
BASN265
BILE267
BGLY12
BGLY298
BASP299
BPRO314
BTHR315
BALA316
BGLN317
BALA319
BLYS376
BHQO602
BHOH706
BTYR13
BHOH708
BGLY14
BASN37
BLYS38
BTYR43
BTHR45
BTHR46

site_idAC2
Number of Residues6
Detailsbinding site for residue HQO B 602
ChainResidue
BGLN317
BILE320
BGLY348
BILE379
BARG382
BFAD601

site_idAC3
Number of Residues30
Detailsbinding site for residue FAD A 601
ChainResidue
AGLY10
AALA11
AGLY12
ATYR13
AGLY14
AASN37
ALYS38
ATYR43
ATHR45
ATHR46
AASP79
ATHR80
AVAL81
AGLY106
ALEU107
AGLY108
AILE126
APHE165
ATHR166
AGLU169
AASN265
AILE267
AGLY298
AASP299
APRO314
ATHR315
AALA316
AGLN317
ATHR349
ALYS376

site_idAC4
Number of Residues23
Detailsbinding site for residue FAD D 601
ChainResidue
DGLY12
DTYR13
DGLY14
DASN37
DLYS38
DTYR43
DTHR45
DTHR46
DASP79
DTHR80
DVAL81
DLEU107
DGLY108
DILE126
DPHE165
DTHR166
DASN265
DILE267
DASP299
DPRO314
DTHR315
DALA316
DGLN317

site_idAC5
Number of Residues29
Detailsbinding site for residue FAD C 601
ChainResidue
CTHR80
CVAL81
CGLY106
CLEU107
CGLY108
CILE126
CPHE165
CTHR166
CILE267
CGLY298
CASP299
CPRO314
CTHR315
CALA316
CGLN317
CALA319
CTHR349
CLYS376
CHQO602
CGLY10
CGLY12
CTYR13
CGLY14
CASN37
CLYS38
CTYR43
CTHR45
CTHR46
CASP79

site_idAC6
Number of Residues7
Detailsbinding site for residue HQO C 602
ChainResidue
CGLN317
CILE320
CGLY348
CTHR349
CILE379
CARG382
CFAD601

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PDB entries from 2024-09-18

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