6B88
E. coli LepB in complex with GNE0775 ((4S,7S,10S)-10-((S)-4-amino-2-(2-(4-(tert-butyl)phenyl)-4-methylpyrimidine-5-carboxamido)-N-methylbutanamido)-16,26-bis(2-aminoethoxy)-N-(2-iminoethyl)-7-methyl-6,9-dioxo-5,8-diaza-1,2(1,3)-dibenzenacyclodecaphane-4-carboxamide)
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004252 | molecular_function | serine-type endopeptidase activity |
| A | 0006465 | biological_process | signal peptide processing |
| A | 0006508 | biological_process | proteolysis |
| A | 0008236 | molecular_function | serine-type peptidase activity |
| A | 0016020 | cellular_component | membrane |
| B | 0004252 | molecular_function | serine-type endopeptidase activity |
| B | 0006465 | biological_process | signal peptide processing |
| B | 0006508 | biological_process | proteolysis |
| B | 0008236 | molecular_function | serine-type peptidase activity |
| B | 0016020 | cellular_component | membrane |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 15 |
| Details | binding site for residue CZD A 401 |
| Chain | Residue |
| A | PRO83 |
| A | ALA279 |
| A | TRP300 |
| A | TRP300 |
| A | HOH522 |
| B | LEU314 |
| B | LEU316 |
| A | PHE84 |
| A | GLN85 |
| A | PRO87 |
| A | SER90 |
| A | ASP142 |
| A | TYR143 |
| A | ILE144 |
| A | LYS145 |
| site_id | AC2 |
| Number of Residues | 9 |
| Details | binding site for residue 1PE B 401 |
| Chain | Residue |
| A | TYR251 |
| A | PRO254 |
| A | TRP284 |
| A | PHE286 |
| B | GLU137 |
| B | TYR251 |
| B | GLN253 |
| B | TRP284 |
| B | HOH518 |
| site_id | AC3 |
| Number of Residues | 14 |
| Details | binding site for residue CZD B 402 |
| Chain | Residue |
| A | LEU314 |
| B | GLU82 |
| B | PRO83 |
| B | PHE84 |
| B | GLN85 |
| B | PRO87 |
| B | SER90 |
| B | ASP142 |
| B | TYR143 |
| B | ILE144 |
| B | LYS145 |
| B | ALA279 |
| B | TRP300 |
| B | TRP300 |
Functional Information from PROSITE/UniProt
| site_id | PS00501 |
| Number of Residues | 8 |
| Details | SPASE_I_1 Signal peptidases I serine active site. SGSMMPTL |
| Chain | Residue | Details |
| A | SER88-LEU95 | |
| site_id | PS00760 |
| Number of Residues | 13 |
| Details | SPASE_I_2 Signal peptidases I lysine active site. KRAVGlPGDkVtY |
| Chain | Residue | Details |
| A | LYS145-TYR157 | |
| site_id | PS00761 |
| Number of Residues | 14 |
| Details | SPASE_I_3 Signal peptidases I signature 3. YFMMGDNRdnSadS |
| Chain | Residue | Details |
| A | TYR268-SER281 | |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | Active site: {} |
Catalytic Information from CSA
| site_id | MCSA1 |
| Number of Residues | 4 |
| Details | M-CSA 635 |
| Chain | Residue | Details |
| A | SER88 | electrostatic stabiliser |
| A | SER90 | nucleofuge, nucleophile, proton acceptor, proton donor |
| A | LYS145 | proton acceptor, proton donor |
| A | SER278 | electrostatic stabiliser |
| site_id | MCSA2 |
| Number of Residues | 4 |
| Details | M-CSA 635 |
| Chain | Residue | Details |
| B | SER88 | electrostatic stabiliser |
| B | SER90 | nucleofuge, nucleophile, proton acceptor, proton donor |
| B | LYS145 | proton acceptor, proton donor |
| B | SER278 | electrostatic stabiliser |
