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6AZE

Crystal Structure of the BPTF PHD-bromodomain module bound to H3KC4me3 methyl lysine analog

Functional Information from GO Data
ChainGOidnamespacecontents
A0006357biological_processregulation of transcription by RNA polymerase II
A0016589cellular_componentNURF complex
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 201
ChainResidue
ACYS11
ACYS13
AHIS34
ACYS37

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 202
ChainResidue
ACYS26
ACYS29
ACYS53
ACYS56

site_idAC3
Number of Residues9
Detailsbinding site for Ligand residues ML3 P 4 through GLN P 5 bound to THR P 3
ChainResidue
ATYR17
ALYS21
APHE22
ATYR23
ATRP32
AHOH306
PTHR3
PTHR6
ATYR10

Functional Information from PROSITE/UniProt
site_idPS00633
Number of Residues58
DetailsBROMODOMAIN_1 Bromodomain signature. AwpFlepvDpndap..DYYgvIkepMdlatMeervqrry..Yekltefvadmtk.IfdNCryY
ChainResidueDetails
AALA90-TYR147

site_idPS01186
Number of Residues16
DetailsEGF_2 EGF-like domain signature 2. CiCktPYdeskfyigC
ChainResidueDetails
ACYS11-CYS26

site_idPS01359
Number of Residues46
DetailsZF_PHD_1 Zinc finger PHD-type signature. Ci.Cktpydeskfy...................................IgCdr..Cqnw.YHgrCvgilqseaelide................................YvCpqC
ChainResidueDetails
ACYS11-CYS56

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: Citrulline; alternate => ECO:0000269|PubMed:16567635
ChainResidueDetails
PARG2

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Phosphothreonine; by HASPIN and VRK1 => ECO:0000269|PubMed:15681610, ECO:0000269|PubMed:16185088, ECO:0000269|PubMed:31527692
ChainResidueDetails
PTHR3
ATYR17
ATYR23
ATRP32

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:16267050, ECO:0000269|PubMed:16457588, ECO:0000269|PubMed:17194708
ChainResidueDetails
PML34

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: 5-glutamyl serotonin; alternate => ECO:0000269|PubMed:30867594
ChainResidueDetails
PGLN5

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Phosphothreonine; by PKC => ECO:0000269|PubMed:20228790
ChainResidueDetails
PTHR6

222036

PDB entries from 2024-07-03

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