6AQG
Crystal Structure of Lysyl-tRNA Synthetase from Mycobacterium ulcerans complexed with L-lysine and Cladosporin
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000049 | molecular_function | tRNA binding |
A | 0000166 | molecular_function | nucleotide binding |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
A | 0004824 | molecular_function | lysine-tRNA ligase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006412 | biological_process | translation |
A | 0006418 | biological_process | tRNA aminoacylation for protein translation |
A | 0006430 | biological_process | lysyl-tRNA aminoacylation |
A | 0046872 | molecular_function | metal ion binding |
B | 0000049 | molecular_function | tRNA binding |
B | 0000166 | molecular_function | nucleotide binding |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0003676 | molecular_function | nucleic acid binding |
B | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
B | 0004824 | molecular_function | lysine-tRNA ligase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0006412 | biological_process | translation |
B | 0006418 | biological_process | tRNA aminoacylation for protein translation |
B | 0006430 | biological_process | lysyl-tRNA aminoacylation |
B | 0046872 | molecular_function | metal ion binding |
C | 0000049 | molecular_function | tRNA binding |
C | 0000166 | molecular_function | nucleotide binding |
C | 0000287 | molecular_function | magnesium ion binding |
C | 0003676 | molecular_function | nucleic acid binding |
C | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
C | 0004824 | molecular_function | lysine-tRNA ligase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0006412 | biological_process | translation |
C | 0006418 | biological_process | tRNA aminoacylation for protein translation |
C | 0006430 | biological_process | lysyl-tRNA aminoacylation |
C | 0046872 | molecular_function | metal ion binding |
D | 0000049 | molecular_function | tRNA binding |
D | 0000166 | molecular_function | nucleotide binding |
D | 0000287 | molecular_function | magnesium ion binding |
D | 0003676 | molecular_function | nucleic acid binding |
D | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
D | 0004824 | molecular_function | lysine-tRNA ligase activity |
D | 0005524 | molecular_function | ATP binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0006412 | biological_process | translation |
D | 0006418 | biological_process | tRNA aminoacylation for protein translation |
D | 0006430 | biological_process | lysyl-tRNA aminoacylation |
D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 12 |
Details | binding site for residue LYS A 601 |
Chain | Residue |
A | GLY209 |
A | HOH706 |
A | HOH752 |
A | HOH892 |
A | ALA210 |
A | GLU233 |
A | ARG255 |
A | GLU271 |
A | TYR273 |
A | TYR420 |
A | GLU422 |
A | GLY467 |
site_id | AC2 |
Number of Residues | 12 |
Details | binding site for residue KRS A 602 |
Chain | Residue |
A | THR262 |
A | HIS263 |
A | SER264 |
A | PHE267 |
A | MET269 |
A | LEU416 |
A | GLY469 |
A | GLY471 |
A | ARG474 |
A | ILE484 |
A | HOH739 |
A | HOH763 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue MPD A 603 |
Chain | Residue |
A | GLY242 |
A | GLY243 |
A | PHE244 |
D | GLY83 |
D | ASP84 |
D | ARG173 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue MPD A 604 |
Chain | Residue |
A | GLU257 |
A | GLY258 |
A | ASP260 |
A | HIS263 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue MPD A 605 |
Chain | Residue |
A | VAL67 |
A | PHE68 |
A | PRO147 |
A | VAL148 |
A | VAL168 |
site_id | AC6 |
Number of Residues | 12 |
Details | binding site for residue LYS B 601 |
Chain | Residue |
B | GLY209 |
B | GLU233 |
B | ARG255 |
B | GLU271 |
B | TYR273 |
B | TYR420 |
B | GLU422 |
B | GLY467 |
B | KRS602 |
B | HOH710 |
B | HOH803 |
B | HOH868 |
site_id | AC7 |
Number of Residues | 13 |
Details | binding site for residue KRS B 602 |
Chain | Residue |
B | ARG255 |
B | THR262 |
B | HIS263 |
B | SER264 |
B | PHE267 |
B | LEU416 |
B | GLY469 |
B | GLY471 |
B | ARG474 |
B | ILE484 |
B | LYS601 |
B | HOH777 |
B | HOH795 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue MPD B 603 |
Chain | Residue |
B | GLY83 |
B | ASP84 |
C | GLY242 |
C | GLY243 |
C | PHE244 |
site_id | AC9 |
Number of Residues | 3 |
Details | binding site for residue MPD B 604 |
Chain | Residue |
B | GLU257 |
B | GLY258 |
B | HIS263 |
site_id | AD1 |
Number of Residues | 6 |
Details | binding site for residue MPD B 605 |
Chain | Residue |
A | GLY331 |
A | GLU332 |
B | GLU332 |
B | GLN333 |
B | HOH769 |
B | HOH863 |
site_id | AD2 |
Number of Residues | 1 |
Details | binding site for residue MPD B 606 |
Chain | Residue |
B | HOH722 |
site_id | AD3 |
Number of Residues | 11 |
Details | binding site for residue LYS C 601 |
Chain | Residue |
C | GLY209 |
C | ALA210 |
C | GLU233 |
C | ARG255 |
C | GLU271 |
C | TYR273 |
C | TYR420 |
C | GLU422 |
C | GLY467 |
C | KRS602 |
C | HOH716 |
site_id | AD4 |
Number of Residues | 13 |
Details | binding site for residue KRS C 602 |
Chain | Residue |
C | GLY471 |
C | ARG474 |
C | LYS601 |
C | HOH723 |
C | GLU257 |
C | THR262 |
C | HIS263 |
C | SER264 |
C | PHE267 |
C | MET269 |
C | GLU415 |
C | THR418 |
C | GLY469 |
site_id | AD5 |
Number of Residues | 6 |
Details | binding site for residue MPD C 603 |
Chain | Residue |
B | LEU196 |
B | GLY242 |
B | GLY243 |
B | PHE244 |
C | GLY83 |
C | ASP84 |
site_id | AD6 |
Number of Residues | 6 |
Details | binding site for residue MPD D 501 |
Chain | Residue |
A | GLY83 |
A | ASP84 |
A | ARG177 |
D | GLY242 |
D | GLY243 |
D | PHE244 |
site_id | AD7 |
Number of Residues | 11 |
Details | binding site for residue LYS D 502 |
Chain | Residue |
D | GLY209 |
D | GLU233 |
D | ARG255 |
D | MET269 |
D | GLU271 |
D | TYR273 |
D | TYR420 |
D | GLU422 |
D | GLY467 |
D | KRS503 |
D | HOH649 |
site_id | AD8 |
Number of Residues | 12 |
Details | binding site for residue KRS D 503 |
Chain | Residue |
D | GLU257 |
D | THR262 |
D | HIS263 |
D | SER264 |
D | PHE267 |
D | MET269 |
D | GLU415 |
D | THR418 |
D | GLY469 |
D | ARG474 |
D | LYS502 |
D | HOH702 |