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6AB2

Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with oClZLys

Functional Information from GO Data
ChainGOidnamespacecontents
A0000049molecular_functiontRNA binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0005524molecular_functionATP binding
A0043039biological_processtRNA aminoacylation
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MG A 501
ChainResidue
AATP504
AHOH647
AHOH649
AHOH690
AHOH747

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 502
ChainResidue
AHOH693
AHOH722
AGLU396
ASER399
AMG503
AATP504

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 503
ChainResidue
AGLU207
AGLU396
AMG502
AATP504
AHOH611
AHOH693

site_idAC4
Number of Residues26
Detailsbinding site for residue ATP A 504
ChainResidue
AGLU207
AARG330
AGLU332
AHIS338
ALEU339
APHE342
AMET344
AGLU396
ALEU397
ASER398
ASER399
AGLY421
AGLY423
AARG426
AMG501
AMG502
AMG503
A9V6505
AHOH611
AHOH647
AHOH649
AHOH690
AHOH693
AHOH722
AHOH757
AHOH772

site_idAC5
Number of Residues16
Detailsbinding site for residue 9V6 A 505
ChainResidue
AMET300
AALA302
ALEU309
AARG330
AMET344
AASN346
ACYS348
APHE384
ASER399
AASP408
AILE413
ATRP417
AGLY419
AALA420
AATP504
A9V6506

site_idAC6
Number of Residues17
Detailsbinding site for residue 9V6 A 506
ChainResidue
AMET276
AALA302
ALEU305
AALA306
ALEU309
AASN346
ACYS348
APHE384
ASER399
AVAL401
ALEU407
AASP408
ATRP411
AILE413
ATRP417
AGLY421
A9V6505

site_idAC7
Number of Residues6
Detailsbinding site for residue K A 507
ChainResidue
AASN203
APRO204
AASP206
AHOH602
AHOH619
AHOH836

site_idAC8
Number of Residues3
Detailsbinding site for residue K A 508
ChainResidue
AGLU341
AARG442
AEDO510

site_idAC9
Number of Residues5
Detailsbinding site for residue EDO A 509
ChainResidue
AASP196
AGLU199
AVAL200
ATYR446
AHOH630

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO A 510
ChainResidue
ALEU339
AGLU340
AGLU341
ALYS438
AK508

site_idAD2
Number of Residues4
Detailsbinding site for residue EDO A 511
ChainResidue
ALEU370
AGLY371
AHOH606
AHOH677

223790

PDB entries from 2024-08-14

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