6A8C
Ribokinase from Leishmania donovani with ADP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0004747 | molecular_function | ribokinase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006014 | biological_process | D-ribose metabolic process |
| A | 0016301 | molecular_function | kinase activity |
| A | 0016740 | molecular_function | transferase activity |
| A | 0019303 | biological_process | D-ribose catabolic process |
| A | 0044281 | biological_process | small molecule metabolic process |
| A | 0046835 | biological_process | carbohydrate phosphorylation |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0004747 | molecular_function | ribokinase activity |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005634 | cellular_component | nucleus |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006014 | biological_process | D-ribose metabolic process |
| B | 0016301 | molecular_function | kinase activity |
| B | 0016740 | molecular_function | transferase activity |
| B | 0019303 | biological_process | D-ribose catabolic process |
| B | 0044281 | biological_process | small molecule metabolic process |
| B | 0046835 | biological_process | carbohydrate phosphorylation |
| B | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 9 |
| Details | binding site for residue GOL A 401 |
| Chain | Residue |
| A | ASP27 |
| A | GLY52 |
| A | GLY53 |
| A | LYS54 |
| A | ASN57 |
| A | THR314 |
| A | HOH508 |
| A | HOH538 |
| A | HOH567 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue NA A 402 |
| Chain | Residue |
| A | ALA67 |
| A | GLY92 |
| A | GLU135 |
| A | HOH519 |
| A | HOH600 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | binding site for residue NA A 403 |
| Chain | Residue |
| A | ASP272 |
| A | SER308 |
| A | ARG311 |
| A | SER317 |
| A | HOH527 |
| A | HOH583 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue NA A 404 |
| Chain | Residue |
| A | GLU210 |
| A | THR222 |
| A | HOH509 |
| A | HOH608 |
| A | HOH633 |
| A | HOH643 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | binding site for residue NA A 405 |
| Chain | Residue |
| A | ASN293 |
| A | HOH582 |
| A | HOH621 |
| site_id | AC6 |
| Number of Residues | 2 |
| Details | binding site for residue NA A 406 |
| Chain | Residue |
| A | PRO162 |
| A | HOH519 |
| site_id | AC7 |
| Number of Residues | 2 |
| Details | binding site for residue NA A 407 |
| Chain | Residue |
| A | ARG5 |
| A | ARG100 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | binding site for residue CL A 408 |
| Chain | Residue |
| A | SER105 |
| A | ASN127 |
| A | HOH576 |
| site_id | AC9 |
| Number of Residues | 3 |
| Details | binding site for residue CL A 409 |
| Chain | Residue |
| A | ALA4 |
| A | ARG5 |
| A | ARG100 |
| site_id | AD1 |
| Number of Residues | 5 |
| Details | binding site for residue CL A 410 |
| Chain | Residue |
| A | GLY50 |
| A | PHE51 |
| A | HOH516 |
| A | HOH550 |
| A | HOH609 |
| site_id | AD2 |
| Number of Residues | 24 |
| Details | binding site for residue ADP A 411 |
| Chain | Residue |
| A | ASN209 |
| A | THR245 |
| A | LEU246 |
| A | GLY247 |
| A | ALA248 |
| A | GLY250 |
| A | LYS266 |
| A | VAL268 |
| A | ALA270 |
| A | THR273 |
| A | GLY275 |
| A | ALA276 |
| A | GLY277 |
| A | PHE280 |
| A | ASN302 |
| A | ALA305 |
| A | HOH502 |
| A | HOH514 |
| A | HOH517 |
| A | HOH525 |
| A | HOH528 |
| A | HOH533 |
| A | HOH551 |
| A | HOH561 |
| site_id | AD3 |
| Number of Residues | 10 |
| Details | binding site for residue GOL B 501 |
| Chain | Residue |
| A | SER44 |
| A | VAL45 |
| A | SER46 |
| A | PHE47 |
| B | CYS125 |
| B | PRO126 |
| B | ASN127 |
| B | ASN130 |
| B | GLU323 |
| B | HOH639 |
| site_id | AD4 |
| Number of Residues | 5 |
| Details | binding site for residue NA B 502 |
| Chain | Residue |
| B | ALA67 |
| B | GLY92 |
| B | GLU135 |
| B | HOH633 |
| B | HOH710 |
| site_id | AD5 |
| Number of Residues | 6 |
| Details | binding site for residue NA B 503 |
| Chain | Residue |
| B | ASP272 |
| B | SER308 |
| B | ARG311 |
| B | SER317 |
| B | HOH630 |
| B | HOH678 |
| site_id | AD6 |
| Number of Residues | 1 |
| Details | binding site for residue NA B 504 |
| Chain | Residue |
| B | HOH658 |
| site_id | AD7 |
| Number of Residues | 1 |
| Details | binding site for residue CL B 505 |
| Chain | Residue |
| B | ARG64 |
| site_id | AD8 |
| Number of Residues | 3 |
| Details | binding site for residue CL B 506 |
| Chain | Residue |
| B | PHE51 |
| B | HOH636 |
| B | HOH699 |
| site_id | AD9 |
| Number of Residues | 3 |
| Details | binding site for residue CL B 507 |
| Chain | Residue |
| B | ALA4 |
| B | ARG5 |
| B | ARG100 |
| site_id | AE1 |
| Number of Residues | 3 |
| Details | binding site for residue CL B 508 |
| Chain | Residue |
| B | ASN127 |
| B | SER104 |
| B | SER105 |
| site_id | AE2 |
| Number of Residues | 3 |
| Details | binding site for residue CL B 509 |
| Chain | Residue |
| A | HOH520 |
| B | HIS267 |
| B | HOH675 |
| site_id | AE3 |
| Number of Residues | 6 |
| Details | binding site for residue CL B 510 |
| Chain | Residue |
| B | GLN235 |
| B | ARG240 |
| B | ASP241 |
| B | SER254 |
| B | ASN256 |
| B | GLY257 |
| site_id | AE4 |
| Number of Residues | 21 |
| Details | binding site for residue ADP B 511 |
| Chain | Residue |
| B | ASN209 |
| B | THR245 |
| B | LEU246 |
| B | GLY247 |
| B | ALA248 |
| B | GLY250 |
| B | LYS266 |
| B | VAL268 |
| B | ALA270 |
| B | THR273 |
| B | ALA276 |
| B | GLY277 |
| B | PHE280 |
| B | ASN302 |
| B | ALA305 |
| B | HOH609 |
| B | HOH632 |
| B | HOH649 |
| B | HOH661 |
| B | HOH662 |
| B | HOH702 |
