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6A8C

Ribokinase from Leishmania donovani with ADP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004747molecular_functionribokinase activity
A0005524molecular_functionATP binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006014biological_processD-ribose metabolic process
A0016301molecular_functionkinase activity
A0019303biological_processD-ribose catabolic process
A0046835biological_processcarbohydrate phosphorylation
A0046872molecular_functionmetal ion binding
B0004747molecular_functionribokinase activity
B0005524molecular_functionATP binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006014biological_processD-ribose metabolic process
B0016301molecular_functionkinase activity
B0019303biological_processD-ribose catabolic process
B0046835biological_processcarbohydrate phosphorylation
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue GOL A 401
ChainResidue
AASP27
AGLY52
AGLY53
ALYS54
AASN57
ATHR314
AHOH508
AHOH538
AHOH567

site_idAC2
Number of Residues5
Detailsbinding site for residue NA A 402
ChainResidue
AALA67
AGLY92
AGLU135
AHOH519
AHOH600

site_idAC3
Number of Residues6
Detailsbinding site for residue NA A 403
ChainResidue
AASP272
ASER308
AARG311
ASER317
AHOH527
AHOH583

site_idAC4
Number of Residues6
Detailsbinding site for residue NA A 404
ChainResidue
AGLU210
ATHR222
AHOH509
AHOH608
AHOH633
AHOH643

site_idAC5
Number of Residues3
Detailsbinding site for residue NA A 405
ChainResidue
AASN293
AHOH582
AHOH621

site_idAC6
Number of Residues2
Detailsbinding site for residue NA A 406
ChainResidue
APRO162
AHOH519

site_idAC7
Number of Residues2
Detailsbinding site for residue NA A 407
ChainResidue
AARG5
AARG100

site_idAC8
Number of Residues3
Detailsbinding site for residue CL A 408
ChainResidue
ASER105
AASN127
AHOH576

site_idAC9
Number of Residues3
Detailsbinding site for residue CL A 409
ChainResidue
AALA4
AARG5
AARG100

site_idAD1
Number of Residues5
Detailsbinding site for residue CL A 410
ChainResidue
AGLY50
APHE51
AHOH516
AHOH550
AHOH609

site_idAD2
Number of Residues24
Detailsbinding site for residue ADP A 411
ChainResidue
AASN209
ATHR245
ALEU246
AGLY247
AALA248
AGLY250
ALYS266
AVAL268
AALA270
ATHR273
AGLY275
AALA276
AGLY277
APHE280
AASN302
AALA305
AHOH502
AHOH514
AHOH517
AHOH525
AHOH528
AHOH533
AHOH551
AHOH561

site_idAD3
Number of Residues10
Detailsbinding site for residue GOL B 501
ChainResidue
ASER44
AVAL45
ASER46
APHE47
BCYS125
BPRO126
BASN127
BASN130
BGLU323
BHOH639

site_idAD4
Number of Residues5
Detailsbinding site for residue NA B 502
ChainResidue
BALA67
BGLY92
BGLU135
BHOH633
BHOH710

site_idAD5
Number of Residues6
Detailsbinding site for residue NA B 503
ChainResidue
BASP272
BSER308
BARG311
BSER317
BHOH630
BHOH678

site_idAD6
Number of Residues1
Detailsbinding site for residue NA B 504
ChainResidue
BHOH658

site_idAD7
Number of Residues1
Detailsbinding site for residue CL B 505
ChainResidue
BARG64

site_idAD8
Number of Residues3
Detailsbinding site for residue CL B 506
ChainResidue
BPHE51
BHOH636
BHOH699

site_idAD9
Number of Residues3
Detailsbinding site for residue CL B 507
ChainResidue
BALA4
BARG5
BARG100

site_idAE1
Number of Residues3
Detailsbinding site for residue CL B 508
ChainResidue
BASN127
BSER104
BSER105

site_idAE2
Number of Residues3
Detailsbinding site for residue CL B 509
ChainResidue
AHOH520
BHIS267
BHOH675

site_idAE3
Number of Residues6
Detailsbinding site for residue CL B 510
ChainResidue
BGLN235
BARG240
BASP241
BSER254
BASN256
BGLY257

site_idAE4
Number of Residues21
Detailsbinding site for residue ADP B 511
ChainResidue
BASN209
BTHR245
BLEU246
BGLY247
BALA248
BGLY250
BLYS266
BVAL268
BALA270
BTHR273
BALA276
BGLY277
BPHE280
BASN302
BALA305
BHOH609
BHOH632
BHOH649
BHOH661
BHOH662
BHOH702

219140

PDB entries from 2024-05-01

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