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6A6A

VanYB in complex with D-Alanine

Functional Information from GO Data
ChainGOidnamespacecontents
A0006508biological_processproteolysis
A0008233molecular_functionpeptidase activity
B0006508biological_processproteolysis
B0008233molecular_functionpeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues11
Detailsbinding site for residue DAL A 301
ChainResidue
AARG146
AACT304
AHOH403
AGLN151
ATRP179
AVAL180
AALA181
ASER186
AHIS188
ATYR225
AGLU238

site_idAC2
Number of Residues8
Detailsbinding site for residue GOL A 302
ChainResidue
ALEU111
ASER112
AASN113
AARG133
AILE140
AVAL141
AGOL303
BGLU153

site_idAC3
Number of Residues4
Detailsbinding site for residue GOL A 303
ChainResidue
ALEU125
APHE129
AARG133
AGOL302

site_idAC4
Number of Residues9
Detailsbinding site for residue ACT A 304
ChainResidue
AARG146
ATRP179
AHIS188
AASP195
AGLU238
ATRP240
AHIS241
ADAL301
AZN305

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN A 305
ChainResidue
AHIS188
AASP195
AHIS241
AACT304

site_idAC6
Number of Residues3
Detailsbinding site for residue PGE A 306
ChainResidue
ALYS158
ATRP179
APGE307

site_idAC7
Number of Residues3
Detailsbinding site for residue PGE A 307
ChainResidue
AASN197
ATRP240
APGE306

site_idAC8
Number of Residues10
Detailsbinding site for residue DAL B 301
ChainResidue
BARG146
BGLN151
BTRP179
BVAL180
BALA181
BSER186
BHIS188
BTYR225
BGLU238
BACT304

site_idAC9
Number of Residues6
Detailsbinding site for residue GOL B 302
ChainResidue
AGLU153
BSER112
BASN113
BILE140
BVAL141
BGOL303

site_idAD1
Number of Residues5
Detailsbinding site for residue GOL B 303
ChainResidue
BLEU111
BLEU125
BGLN126
BPHE129
BGOL302

site_idAD2
Number of Residues9
Detailsbinding site for residue ACT B 304
ChainResidue
BARG146
BTRP179
BHIS188
BASP195
BGLU238
BTRP240
BHIS241
BDAL301
BZN305

site_idAD3
Number of Residues4
Detailsbinding site for residue ZN B 305
ChainResidue
BHIS188
BASP195
BHIS241
BACT304

site_idAD4
Number of Residues2
Detailsbinding site for residue PGE B 306
ChainResidue
BLYS158
BTRP179

site_idAD5
Number of Residues3
Detailsbinding site for residue PGE B 307
ChainResidue
BASP195
BASN197
BTRP240

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor/acceptor => ECO:0000305|PubMed:30016658
ChainResidueDetails
AGLU238
BGLU238

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:30016658
ChainResidueDetails
ASER186
BGLN151
BTRP179
BSER186
AGLN151
ATRP179

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:30016658, ECO:0007744|PDB:5HNM
ChainResidueDetails
AHIS241
BHIS188
BASP195
BHIS241
AHIS188
AASP195

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PDB entries from 2024-06-12

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