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5ZQ8

Crystal structure of spRlmCD with U747 stemloop RNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0006396biological_processRNA processing
A0008173molecular_functionRNA methyltransferase activity
B0006396biological_processRNA processing
B0008173molecular_functionRNA methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues11
Detailsbinding site for residue SAH B 501
ChainResidue
BPHE281
BALA361
BASP381
BTYR293
BTYR312
BSER313
BILE315
BTHR317
BGLU333
BLEU334
BTHR360

site_idAC2
Number of Residues2
Detailsbinding site for residue NI B 502
ChainResidue
BHIS17
BHIS440

site_idAC3
Number of Residues12
Detailsbinding site for residue SAH A 501
ChainResidue
APHE281
AGLN283
ATYR293
ATYR312
ASER313
ATHR317
AILE318
ALEU334
AALA361
AASP381
AHOH604
DMUM747

site_idAC4
Number of Residues2
Detailsbinding site for residue NI A 502
ChainResidue
AHIS17
AHIS440

site_idAC5
Number of Residues25
Detailsbinding site for Di-nucleotide MUM C 747 and G C 748
ChainResidue
BILE80
BARG127
BLYS129
BALA130
BGLN131
BPHE145
BILE161
BGLN162
BPHE281
BGLN283
BASP381
BPRO382
BARG384
BCYS408
BPHE436
BHIS441
BGLN443
BHOH616
BHOH617
CU746
CA749
CA750
CHOH802
CHOH803
CHOH804

site_idAC6
Number of Residues24
Detailsbinding site for Di-nucleotide MUM D 747 and G D 748
ChainResidue
AGLY79
AILE80
AARG127
ALYS129
AALA130
AGLN131
APHE145
AILE161
AGLN162
APHE281
AGLN283
AASP381
APRO382
AARG384
ACYS408
APHE436
AHIS441
AGLN443
ASAH501
DU746
DA749
DA750
DHOH801
DHOH802

Functional Information from PROSITE/UniProt
site_idPS01230
Number of Residues32
DetailsTRMA_1 RNA methyltransferase trmA family signature 1. DPPRkGltesfikasaqtgadr...IAYiSCNvaT
ChainResidueDetails
BASP381-THR412

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000255|PROSITE-ProRule:PRU01024
ChainResidueDetails
BCYS408
ACYS408

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01024
ChainResidueDetails
BGLN283
BTYR312
BGLU333
BASP381
AGLN283
ATYR312
AGLU333
AASP381

223532

PDB entries from 2024-08-07

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