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5ZKA

Crystal structure of N-acetylneuraminate lyase from Fusobacterium nucleatum complexed with Pyruvate

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005975biological_processcarbohydrate metabolic process
A0008747molecular_functionN-acetylneuraminate lyase activity
A0016829molecular_functionlyase activity
A0019262biological_processN-acetylneuraminate catabolic process
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0005975biological_processcarbohydrate metabolic process
B0008747molecular_functionN-acetylneuraminate lyase activity
B0016829molecular_functionlyase activity
B0019262biological_processN-acetylneuraminate catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues2
Detailsbinding site for residue EDO A 301
ChainResidue
AGLY-1
AALA-2

site_idAC2
Number of Residues2
Detailsbinding site for residue EDO A 302
ChainResidue
ALYS289
ALYS289

site_idAC3
Number of Residues3
Detailsbinding site for residue EDO A 303
ChainResidue
AASP187
AGLU188
AHOH428

site_idAC4
Number of Residues6
Detailsbinding site for residue EDO B 301
ChainResidue
BCYS99
BGLN274
BHOH411
BHOH434
BPHE0
BLYS98

site_idAC5
Number of Residues3
Detailsbinding site for residue EDO B 302
ChainResidue
BASP187
BGLU188
BHOH427

site_idAC6
Number of Residues4
Detailsbinding site for residue PGE B 303
ChainResidue
BPHE152
BALA176
BPRO178
BASP179

Functional Information from PROSITE/UniProt
site_idPS00665
Number of Residues18
DetailsDHDPS_1 Dihydrodipicolinate synthase signature 1. GLYvgGSTGENfmisteE
ChainResidueDetails
AGLY38-GLU55
BGLY38-GLU55

site_idPS00666
Number of Residues31
DetailsDHDPS_2 Dihydrodipicolinate synthase signature 2. YSIPflTgvnMslsqfgelfenek.IiGVKFT
ChainResidueDetails
ATYR133-THR163
BTYR133-THR163

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"HAMAP-Rule","id":"MF_01237","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"description":"Schiff-base intermediate with substrate","evidences":[{"source":"HAMAP-Rule","id":"MF_01237","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"30387778","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues14
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01237","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

250059

PDB entries from 2026-03-04

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