5ZI4
MDH3 wild type, nad-oaa-form
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003729 | molecular_function | mRNA binding |
A | 0003824 | molecular_function | catalytic activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0005739 | cellular_component | mitochondrion |
A | 0005777 | cellular_component | peroxisome |
A | 0005782 | cellular_component | peroxisomal matrix |
A | 0006097 | biological_process | glyoxylate cycle |
A | 0006099 | biological_process | tricarboxylic acid cycle |
A | 0006108 | biological_process | malate metabolic process |
A | 0006635 | biological_process | fatty acid beta-oxidation |
A | 0006735 | biological_process | NADH regeneration |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016615 | molecular_function | malate dehydrogenase activity |
A | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
A | 0019752 | biological_process | carboxylic acid metabolic process |
A | 0030060 | molecular_function | L-malate dehydrogenase (NAD+) activity |
B | 0003729 | molecular_function | mRNA binding |
B | 0003824 | molecular_function | catalytic activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0005739 | cellular_component | mitochondrion |
B | 0005777 | cellular_component | peroxisome |
B | 0005782 | cellular_component | peroxisomal matrix |
B | 0006097 | biological_process | glyoxylate cycle |
B | 0006099 | biological_process | tricarboxylic acid cycle |
B | 0006108 | biological_process | malate metabolic process |
B | 0006635 | biological_process | fatty acid beta-oxidation |
B | 0006735 | biological_process | NADH regeneration |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016615 | molecular_function | malate dehydrogenase activity |
B | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
B | 0019752 | biological_process | carboxylic acid metabolic process |
B | 0030060 | molecular_function | L-malate dehydrogenase (NAD+) activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 9 |
Details | binding site for residue OAA A 401 |
Chain | Residue |
A | ARG80 |
A | ASN118 |
A | ARG152 |
A | HIS187 |
A | GLY220 |
A | ALA233 |
A | NAD402 |
A | HOH511 |
A | HOH529 |
site_id | AC2 |
Number of Residues | 31 |
Details | binding site for residue NAD A 402 |
Chain | Residue |
A | GLY8 |
A | SER10 |
A | GLY11 |
A | GLY12 |
A | VAL13 |
A | TYR33 |
A | ASP34 |
A | ILE35 |
A | PRO75 |
A | ALA76 |
A | GLY77 |
A | VAL78 |
A | PRO79 |
A | ASN93 |
A | ILE96 |
A | LEU100 |
A | ILE116 |
A | ASN118 |
A | VAL145 |
A | HIS187 |
A | ALA233 |
A | MET237 |
A | OAA401 |
A | HOH508 |
A | HOH509 |
A | HOH511 |
A | HOH516 |
A | HOH524 |
A | HOH535 |
A | HOH539 |
A | HOH549 |
site_id | AC3 |
Number of Residues | 10 |
Details | binding site for residue OAA B 401 |
Chain | Residue |
B | ARG80 |
B | ASN118 |
B | ARG152 |
B | HIS187 |
B | GLY220 |
B | ALA233 |
B | NAD402 |
B | HOH536 |
B | HOH539 |
B | HOH554 |
site_id | AC4 |
Number of Residues | 34 |
Details | binding site for residue NAD B 402 |
Chain | Residue |
B | GLY8 |
B | SER10 |
B | GLY11 |
B | GLY12 |
B | VAL13 |
B | TYR33 |
B | ASP34 |
B | ILE35 |
B | PRO75 |
B | ALA76 |
B | GLY77 |
B | VAL78 |
B | PRO79 |
B | ASN93 |
B | LEU100 |
B | ILE116 |
B | ASN118 |
B | VAL145 |
B | HIS187 |
B | ALA233 |
B | THR234 |
B | MET237 |
B | OAA401 |
B | HOH509 |
B | HOH513 |
B | HOH514 |
B | HOH520 |
B | HOH522 |
B | HOH523 |
B | HOH534 |
B | HOH536 |
B | HOH546 |
B | HOH559 |
B | HOH575 |
Functional Information from PROSITE/UniProt
site_id | PS00068 |
Number of Residues | 13 |
Details | MDH Malate dehydrogenase active site signature. VTNLDlvRAetfL |
Chain | Residue | Details |
A | VAL145-LEU157 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Proton acceptor => ECO:0000250|UniProtKB:P00346 |
Chain | Residue | Details |
A | HIS187 | |
B | HIS187 |
site_id | SWS_FT_FI2 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000250|UniProtKB:P40926 |
Chain | Residue | Details |
A | GLY8 | |
B | MET237 | |
A | ASP34 | |
A | ASN93 | |
A | ILE116 | |
A | MET237 | |
B | GLY8 | |
B | ASP34 | |
B | ASN93 | |
B | ILE116 |
site_id | SWS_FT_FI3 |
Number of Residues | 8 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU10004 |
Chain | Residue | Details |
A | ARG80 | |
A | ARG86 | |
A | ASN118 | |
A | ARG152 | |
B | ARG80 | |
B | ARG86 | |
B | ASN118 | |
B | ARG152 |