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5ZHX

Crystal structure of SmgGDS-558 and farnesylated RhoA complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0005085molecular_functionguanyl-nucleotide exchange factor activity
A0043547biological_processpositive regulation of GTPase activity
B0005085molecular_functionguanyl-nucleotide exchange factor activity
B0043547biological_processpositive regulation of GTPase activity
C0005085molecular_functionguanyl-nucleotide exchange factor activity
C0043547biological_processpositive regulation of GTPase activity
D0005085molecular_functionguanyl-nucleotide exchange factor activity
D0043547biological_processpositive regulation of GTPase activity
e0000166molecular_functionnucleotide binding
e0000281biological_processmitotic cytokinesis
e0002363biological_processalpha-beta T cell lineage commitment
e0003189biological_processaortic valve formation
e0003924molecular_functionGTPase activity
e0003925molecular_functionG protein activity
e0005515molecular_functionprotein binding
e0005525molecular_functionGTP binding
e0005634cellular_componentnucleus
e0005737cellular_componentcytoplasm
e0005768cellular_componentendosome
e0005789cellular_componentendoplasmic reticulum membrane
e0005829cellular_componentcytosol
e0005856cellular_componentcytoskeleton
e0005886cellular_componentplasma membrane
e0005925cellular_componentfocal adhesion
e0005938cellular_componentcell cortex
e0007264biological_processsmall GTPase-mediated signal transduction
e0007266biological_processRho protein signal transduction
e0009898cellular_componentcytoplasmic side of plasma membrane
e0010812biological_processnegative regulation of cell-substrate adhesion
e0016477biological_processcell migration
e0016787molecular_functionhydrolase activity
e0017022molecular_functionmyosin binding
e0019901molecular_functionprotein kinase binding
e0021762biological_processsubstantia nigra development
e0030027cellular_componentlamellipodium
e0030036biological_processactin cytoskeleton organization
e0030054cellular_componentcell junction
e0030334biological_processregulation of cell migration
e0030335biological_processpositive regulation of cell migration
e0030425cellular_componentdendrite
e0030496cellular_componentmidbody
e0030667cellular_componentsecretory granule membrane
e0031122biological_processcytoplasmic microtubule organization
e0031982cellular_componentvesicle
e0032154cellular_componentcleavage furrow
e0032467biological_processpositive regulation of cytokinesis
e0032587cellular_componentruffle membrane
e0032956biological_processregulation of actin cytoskeleton organization
e0033688biological_processregulation of osteoblast proliferation
e0034329biological_processcell junction assembly
e0034446biological_processsubstrate adhesion-dependent cell spreading
e0035385biological_processRoundabout signaling pathway
e0036089biological_processcleavage furrow formation
e0038027biological_processapolipoprotein A-I-mediated signaling pathway
e0042476biological_processodontogenesis
e0043123biological_processpositive regulation of canonical NF-kappaB signal transduction
e0043149biological_processstress fiber assembly
e0043197cellular_componentdendritic spine
e0043296cellular_componentapical junction complex
e0043297biological_processapical junction assembly
e0043366biological_processbeta selection
e0043542biological_processendothelial cell migration
e0043931biological_processossification involved in bone maturation
e0044319biological_processwound healing, spreading of cells
e0045198biological_processestablishment of epithelial cell apical/basal polarity
e0045666biological_processpositive regulation of neuron differentiation
e0045792biological_processnegative regulation of cell size
e0046638biological_processpositive regulation of alpha-beta T cell differentiation
e0050919biological_processnegative chemotaxis
e0051301biological_processcell division
e0051496biological_processpositive regulation of stress fiber assembly
e0051893biological_processregulation of focal adhesion assembly
e0060071biological_processWnt signaling pathway, planar cell polarity pathway
e0060193biological_processpositive regulation of lipase activity
e0061430biological_processbone trabecula morphogenesis
e0070062cellular_componentextracellular exosome
e0070507biological_processregulation of microtubule cytoskeleton organization
e0071222biological_processcellular response to lipopolysaccharide
e0071345biological_processcellular response to cytokine stimulus
e0071526biological_processsemaphorin-plexin signaling pathway
e0071902biological_processpositive regulation of protein serine/threonine kinase activity
e0071944cellular_componentcell periphery
e0090051biological_processnegative regulation of cell migration involved in sprouting angiogenesis
e0090307biological_processmitotic spindle assembly
e0090324biological_processnegative regulation of oxidative phosphorylation
e0097498biological_processendothelial tube lumen extension
e0098794cellular_componentpostsynapse
e0098978cellular_componentglutamatergic synapse
e0099159biological_processregulation of modification of postsynaptic structure
e0101003cellular_componentficolin-1-rich granule membrane
e1901224biological_processpositive regulation of non-canonical NF-kappaB signal transduction
e1902766biological_processskeletal muscle satellite cell migration
e1903427biological_processnegative regulation of reactive oxygen species biosynthetic process
e1903673biological_processmitotic cleavage furrow formation
e1904996biological_processpositive regulation of leukocyte adhesion to vascular endothelial cell
e1905274biological_processregulation of modification of postsynaptic actin cytoskeleton
e1990869biological_processcellular response to chemokine
e2000406biological_processpositive regulation of T cell migration
f0000166molecular_functionnucleotide binding
f0000281biological_processmitotic cytokinesis
f0002363biological_processalpha-beta T cell lineage commitment
f0003189biological_processaortic valve formation
f0003924molecular_functionGTPase activity
f0003925molecular_functionG protein activity
f0005515molecular_functionprotein binding
f0005525molecular_functionGTP binding
f0005634cellular_componentnucleus
f0005737cellular_componentcytoplasm
f0005768cellular_componentendosome
f0005789cellular_componentendoplasmic reticulum membrane
f0005829cellular_componentcytosol
f0005856cellular_componentcytoskeleton
f0005886cellular_componentplasma membrane
f0005925cellular_componentfocal adhesion
f0005938cellular_componentcell cortex
f0007264biological_processsmall GTPase-mediated signal transduction
f0007266biological_processRho protein signal transduction
f0009898cellular_componentcytoplasmic side of plasma membrane
f0010812biological_processnegative regulation of cell-substrate adhesion
f0016477biological_processcell migration
f0016787molecular_functionhydrolase activity
f0017022molecular_functionmyosin binding
f0019901molecular_functionprotein kinase binding
f0021762biological_processsubstantia nigra development
f0030027cellular_componentlamellipodium
f0030036biological_processactin cytoskeleton organization
f0030054cellular_componentcell junction
f0030334biological_processregulation of cell migration
f0030335biological_processpositive regulation of cell migration
f0030425cellular_componentdendrite
f0030496cellular_componentmidbody
f0030667cellular_componentsecretory granule membrane
f0031122biological_processcytoplasmic microtubule organization
f0031982cellular_componentvesicle
f0032154cellular_componentcleavage furrow
f0032467biological_processpositive regulation of cytokinesis
f0032587cellular_componentruffle membrane
f0032956biological_processregulation of actin cytoskeleton organization
f0033688biological_processregulation of osteoblast proliferation
f0034329biological_processcell junction assembly
f0034446biological_processsubstrate adhesion-dependent cell spreading
f0035385biological_processRoundabout signaling pathway
f0036089biological_processcleavage furrow formation
f0038027biological_processapolipoprotein A-I-mediated signaling pathway
f0042476biological_processodontogenesis
f0043123biological_processpositive regulation of canonical NF-kappaB signal transduction
f0043149biological_processstress fiber assembly
f0043197cellular_componentdendritic spine
f0043296cellular_componentapical junction complex
f0043297biological_processapical junction assembly
f0043366biological_processbeta selection
f0043542biological_processendothelial cell migration
f0043931biological_processossification involved in bone maturation
f0044319biological_processwound healing, spreading of cells
f0045198biological_processestablishment of epithelial cell apical/basal polarity
f0045666biological_processpositive regulation of neuron differentiation
f0045792biological_processnegative regulation of cell size
f0046638biological_processpositive regulation of alpha-beta T cell differentiation
f0050919biological_processnegative chemotaxis
f0051301biological_processcell division
f0051496biological_processpositive regulation of stress fiber assembly
f0051893biological_processregulation of focal adhesion assembly
f0060071biological_processWnt signaling pathway, planar cell polarity pathway
f0060193biological_processpositive regulation of lipase activity
f0061430biological_processbone trabecula morphogenesis
f0070062cellular_componentextracellular exosome
f0070507biological_processregulation of microtubule cytoskeleton organization
f0071222biological_processcellular response to lipopolysaccharide
f0071345biological_processcellular response to cytokine stimulus
f0071526biological_processsemaphorin-plexin signaling pathway
f0071902biological_processpositive regulation of protein serine/threonine kinase activity
f0071944cellular_componentcell periphery
f0090051biological_processnegative regulation of cell migration involved in sprouting angiogenesis
f0090307biological_processmitotic spindle assembly
f0090324biological_processnegative regulation of oxidative phosphorylation
f0097498biological_processendothelial tube lumen extension
f0098794cellular_componentpostsynapse
f0098978cellular_componentglutamatergic synapse
f0099159biological_processregulation of modification of postsynaptic structure
f0101003cellular_componentficolin-1-rich granule membrane
f1901224biological_processpositive regulation of non-canonical NF-kappaB signal transduction
f1902766biological_processskeletal muscle satellite cell migration
f1903427biological_processnegative regulation of reactive oxygen species biosynthetic process
f1903673biological_processmitotic cleavage furrow formation
f1904996biological_processpositive regulation of leukocyte adhesion to vascular endothelial cell
f1905274biological_processregulation of modification of postsynaptic actin cytoskeleton
f1990869biological_processcellular response to chemokine
f2000406biological_processpositive regulation of T cell migration
g0000166molecular_functionnucleotide binding
g0000281biological_processmitotic cytokinesis
g0002363biological_processalpha-beta T cell lineage commitment
g0003189biological_processaortic valve formation
g0003924molecular_functionGTPase activity
g0003925molecular_functionG protein activity
g0005515molecular_functionprotein binding
g0005525molecular_functionGTP binding
g0005634cellular_componentnucleus
g0005737cellular_componentcytoplasm
g0005768cellular_componentendosome
g0005789cellular_componentendoplasmic reticulum membrane
g0005829cellular_componentcytosol
g0005856cellular_componentcytoskeleton
g0005886cellular_componentplasma membrane
g0005925cellular_componentfocal adhesion
g0005938cellular_componentcell cortex
g0007264biological_processsmall GTPase-mediated signal transduction
g0007266biological_processRho protein signal transduction
g0009898cellular_componentcytoplasmic side of plasma membrane
g0010812biological_processnegative regulation of cell-substrate adhesion
g0016477biological_processcell migration
g0016787molecular_functionhydrolase activity
g0017022molecular_functionmyosin binding
g0019901molecular_functionprotein kinase binding
g0021762biological_processsubstantia nigra development
g0030027cellular_componentlamellipodium
g0030036biological_processactin cytoskeleton organization
g0030054cellular_componentcell junction
g0030334biological_processregulation of cell migration
g0030335biological_processpositive regulation of cell migration
g0030425cellular_componentdendrite
g0030496cellular_componentmidbody
g0030667cellular_componentsecretory granule membrane
g0031122biological_processcytoplasmic microtubule organization
g0031982cellular_componentvesicle
g0032154cellular_componentcleavage furrow
g0032467biological_processpositive regulation of cytokinesis
g0032587cellular_componentruffle membrane
g0032956biological_processregulation of actin cytoskeleton organization
g0033688biological_processregulation of osteoblast proliferation
g0034329biological_processcell junction assembly
g0034446biological_processsubstrate adhesion-dependent cell spreading
g0035385biological_processRoundabout signaling pathway
g0036089biological_processcleavage furrow formation
g0038027biological_processapolipoprotein A-I-mediated signaling pathway
g0042476biological_processodontogenesis
g0043123biological_processpositive regulation of canonical NF-kappaB signal transduction
g0043149biological_processstress fiber assembly
g0043197cellular_componentdendritic spine
g0043296cellular_componentapical junction complex
g0043297biological_processapical junction assembly
g0043366biological_processbeta selection
g0043542biological_processendothelial cell migration
g0043931biological_processossification involved in bone maturation
g0044319biological_processwound healing, spreading of cells
g0045198biological_processestablishment of epithelial cell apical/basal polarity
g0045666biological_processpositive regulation of neuron differentiation
g0045792biological_processnegative regulation of cell size
g0046638biological_processpositive regulation of alpha-beta T cell differentiation
g0050919biological_processnegative chemotaxis
g0051301biological_processcell division
g0051496biological_processpositive regulation of stress fiber assembly
g0051893biological_processregulation of focal adhesion assembly
g0060071biological_processWnt signaling pathway, planar cell polarity pathway
g0060193biological_processpositive regulation of lipase activity
g0061430biological_processbone trabecula morphogenesis
g0070062cellular_componentextracellular exosome
g0070507biological_processregulation of microtubule cytoskeleton organization
g0071222biological_processcellular response to lipopolysaccharide
g0071345biological_processcellular response to cytokine stimulus
g0071526biological_processsemaphorin-plexin signaling pathway
g0071902biological_processpositive regulation of protein serine/threonine kinase activity
g0071944cellular_componentcell periphery
g0090051biological_processnegative regulation of cell migration involved in sprouting angiogenesis
g0090307biological_processmitotic spindle assembly
g0090324biological_processnegative regulation of oxidative phosphorylation
g0097498biological_processendothelial tube lumen extension
g0098794cellular_componentpostsynapse
g0098978cellular_componentglutamatergic synapse
g0099159biological_processregulation of modification of postsynaptic structure
g0101003cellular_componentficolin-1-rich granule membrane
g1901224biological_processpositive regulation of non-canonical NF-kappaB signal transduction
g1902766biological_processskeletal muscle satellite cell migration
g1903427biological_processnegative regulation of reactive oxygen species biosynthetic process
g1903673biological_processmitotic cleavage furrow formation
g1904996biological_processpositive regulation of leukocyte adhesion to vascular endothelial cell
g1905274biological_processregulation of modification of postsynaptic actin cytoskeleton
g1990869biological_processcellular response to chemokine
g2000406biological_processpositive regulation of T cell migration
h0000166molecular_functionnucleotide binding
h0000281biological_processmitotic cytokinesis
h0002363biological_processalpha-beta T cell lineage commitment
h0003189biological_processaortic valve formation
h0003924molecular_functionGTPase activity
h0003925molecular_functionG protein activity
h0005515molecular_functionprotein binding
h0005525molecular_functionGTP binding
h0005634cellular_componentnucleus
h0005737cellular_componentcytoplasm
h0005768cellular_componentendosome
h0005789cellular_componentendoplasmic reticulum membrane
h0005829cellular_componentcytosol
h0005856cellular_componentcytoskeleton
h0005886cellular_componentplasma membrane
h0005925cellular_componentfocal adhesion
h0005938cellular_componentcell cortex
h0007264biological_processsmall GTPase-mediated signal transduction
h0007266biological_processRho protein signal transduction
h0009898cellular_componentcytoplasmic side of plasma membrane
h0010812biological_processnegative regulation of cell-substrate adhesion
h0016477biological_processcell migration
h0016787molecular_functionhydrolase activity
h0017022molecular_functionmyosin binding
h0019901molecular_functionprotein kinase binding
h0021762biological_processsubstantia nigra development
h0030027cellular_componentlamellipodium
h0030036biological_processactin cytoskeleton organization
h0030054cellular_componentcell junction
h0030334biological_processregulation of cell migration
h0030335biological_processpositive regulation of cell migration
h0030425cellular_componentdendrite
h0030496cellular_componentmidbody
h0030667cellular_componentsecretory granule membrane
h0031122biological_processcytoplasmic microtubule organization
h0031982cellular_componentvesicle
h0032154cellular_componentcleavage furrow
h0032467biological_processpositive regulation of cytokinesis
h0032587cellular_componentruffle membrane
h0032956biological_processregulation of actin cytoskeleton organization
h0033688biological_processregulation of osteoblast proliferation
h0034329biological_processcell junction assembly
h0034446biological_processsubstrate adhesion-dependent cell spreading
h0035385biological_processRoundabout signaling pathway
h0036089biological_processcleavage furrow formation
h0038027biological_processapolipoprotein A-I-mediated signaling pathway
h0042476biological_processodontogenesis
h0043123biological_processpositive regulation of canonical NF-kappaB signal transduction
h0043149biological_processstress fiber assembly
h0043197cellular_componentdendritic spine
h0043296cellular_componentapical junction complex
h0043297biological_processapical junction assembly
h0043366biological_processbeta selection
h0043542biological_processendothelial cell migration
h0043931biological_processossification involved in bone maturation
h0044319biological_processwound healing, spreading of cells
h0045198biological_processestablishment of epithelial cell apical/basal polarity
h0045666biological_processpositive regulation of neuron differentiation
h0045792biological_processnegative regulation of cell size
h0046638biological_processpositive regulation of alpha-beta T cell differentiation
h0050919biological_processnegative chemotaxis
h0051301biological_processcell division
h0051496biological_processpositive regulation of stress fiber assembly
h0051893biological_processregulation of focal adhesion assembly
h0060071biological_processWnt signaling pathway, planar cell polarity pathway
h0060193biological_processpositive regulation of lipase activity
h0061430biological_processbone trabecula morphogenesis
h0070062cellular_componentextracellular exosome
h0070507biological_processregulation of microtubule cytoskeleton organization
h0071222biological_processcellular response to lipopolysaccharide
h0071345biological_processcellular response to cytokine stimulus
h0071526biological_processsemaphorin-plexin signaling pathway
h0071902biological_processpositive regulation of protein serine/threonine kinase activity
h0071944cellular_componentcell periphery
h0090051biological_processnegative regulation of cell migration involved in sprouting angiogenesis
h0090307biological_processmitotic spindle assembly
h0090324biological_processnegative regulation of oxidative phosphorylation
h0097498biological_processendothelial tube lumen extension
h0098794cellular_componentpostsynapse
h0098978cellular_componentglutamatergic synapse
h0099159biological_processregulation of modification of postsynaptic structure
h0101003cellular_componentficolin-1-rich granule membrane
h1901224biological_processpositive regulation of non-canonical NF-kappaB signal transduction
h1902766biological_processskeletal muscle satellite cell migration
h1903427biological_processnegative regulation of reactive oxygen species biosynthetic process
h1903673biological_processmitotic cleavage furrow formation
h1904996biological_processpositive regulation of leukocyte adhesion to vascular endothelial cell
h1905274biological_processregulation of modification of postsynaptic actin cytoskeleton
h1990869biological_processcellular response to chemokine
h2000406biological_processpositive regulation of T cell migration
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for Di-peptide FAR e 201 and CYS e 190
ChainResidue
ACYS117
ATYR118
AGLN124
ALEU127
ALEU136
AMET152
eLEU191

site_idAC2
Number of Residues9
Detailsbinding site for Di-peptide FAR f 201 and CYS f 190
ChainResidue
BLEU136
BLEU139
BMET152
BCYS153
BVAL155
fGLY189
fLEU191
BTYR118
BGLN124

site_idAC3
Number of Residues10
Detailsbinding site for Di-peptide FAR g 201 and CYS g 190
ChainResidue
CGLN124
CLEU136
CLEU139
CLEU149
CMET152
CCYS153
CVAL155
CASN159
gGLY189
gLEU191

site_idAC4
Number of Residues6
Detailsbinding site for Di-peptide FAR h 201 and CYS h 190
ChainResidue
DCYS117
DTYR118
DGLN124
DMET152
DASN159
hLEU191

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues172
DetailsRepeat: {"description":"ARM 3","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues160
DetailsRepeat: {"description":"ARM 4","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues160
DetailsRepeat: {"description":"ARM 5","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues64
DetailsRegion: {"description":"Interacts with polybasic regions in GTPases","evidences":[{"source":"PubMed","id":"21242305","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28630045","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues196
DetailsRegion: {"description":"Critical for catalytic activity","evidences":[{"source":"PubMed","id":"21242305","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28630045","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues4
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues26
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"10748207","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12777804","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P62820","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues4
DetailsModified residue: {"description":"(Microbial infection) ADP-ribosylasparagine; by botulinum toxin","evidences":[{"source":"PubMed","id":"1328215","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues4
DetailsModified residue: {"description":"Cysteine methyl ester","evidences":[{"source":"UniProtKB","id":"P61585","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues4
DetailsLipidation: {"description":"S-geranylgeranyl cysteine","evidences":[{"source":"UniProtKB","id":"P61585","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues8
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"23871831","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI13
Number of Residues2
DetailsSite: {"description":"(Microbial infection) Cleavage; by yopT","evidences":[{"source":"PubMed","id":"12062101","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12538863","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI14
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine; by PKG/PRKG1","evidences":[{"source":"PubMed","id":"11162591","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI15
Number of Residues6
DetailsLipidation: {"description":"(Microbial infection) N6-stearoyl lysine","evidences":[{"source":"PubMed","id":"30061757","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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