Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5ZCW

Structure of the Methanosarcina mazei class II CPD-photolyase in complex with intact, phosphodiester linked, CPD-lesion

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003677molecular_functionDNA binding
A0003904molecular_functiondeoxyribodipyrimidine photo-lyase activity
A0006281biological_processDNA repair
A0016829molecular_functionlyase activity
B0000166molecular_functionnucleotide binding
B0003677molecular_functionDNA binding
B0003904molecular_functiondeoxyribodipyrimidine photo-lyase activity
B0006281biological_processDNA repair
B0016829molecular_functionlyase activity
Functional Information from PDB Data
site_idAC1
Number of Residues10
Detailsbinding site for residue SO4 A 501
ChainResidue
AGLY65
AHOH664
AILE66
AARG67
AARG215
AALA216
APHE225
AARG405
AHOH613
AHOH626

site_idAC2
Number of Residues29
Detailsbinding site for residue FAD A 502
ChainResidue
ATYR252
ALEU264
ASER265
AASN266
ALEU267
ASER268
ALEU271
AGLU301
AILE302
ATRP305
ALYS306
ASER309
ALYS372
AGLY375
AARG378
AMET379
AALA382
AASN403
AASP409
AGLY410
AASN414
AGLY415
ASER422
AHOH631
AHOH646
AHOH656
AHOH660
AHOH672
CTTD7

site_idAC3
Number of Residues1
Detailsbinding site for residue ACT A 503
ChainResidue
APRO-2

site_idAC4
Number of Residues25
Detailsbinding site for residue FAD B 501
ChainResidue
BTYR252
BLEU264
BSER265
BASN266
BSER268
BLEU271
BGLU301
BILE302
BTRP305
BLYS306
BSER309
BLYS372
BGLY375
BARG378
BMET379
BALA382
BASN403
BASP409
BGLY410
BASN414
BGLY415
BILE419
BSER422
BHOH606
ETTD7

site_idAC5
Number of Residues18
Detailsbinding site for Di-nucleotide DC E 6 and TTD E 7
ChainResidue
BALA160
BHIS161
BARG256
BASN257
BGLU301
BTRP305
BMET379
BTRP421
BARG429
BTRP431
BARG441
BFAD501
BHOH606
EDG5
EDC8
EHOH102
FDA8
FDG9

site_idAC6
Number of Residues19
Detailsbinding site for Di-nucleotide TTD E 7 and DC E 8
ChainResidue
EDG9
EHOH102
FDG6
BALA160
BHIS161
BARG256
BASN257
BGLU301
BTRP305
BTYR376
BMET379
BTRP421
BTRP431
BARG441
BTYR442
BMET443
BFAD501
BHOH606
EDC6

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon