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5Z94

Crystal Structure of SIRT3 in complex with H3K4bhb peptide

Functional Information from GO Data
ChainGOidnamespacecontents
A0017136molecular_functionNAD-dependent histone deacetylase activity
A0051287molecular_functionNAD binding
A0070403molecular_functionNAD+ binding
B0017136molecular_functionNAD-dependent histone deacetylase activity
B0051287molecular_functionNAD binding
B0070403molecular_functionNAD+ binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS256
ACYS259
ACYS280
ACYS283

site_idAC2
Number of Residues3
Detailsbinding site for residue GOL A 402
ChainResidue
ALEU298
ALEU303
CARG2

site_idAC3
Number of Residues3
Detailsbinding site for residue GOL A 403
ChainResidue
AGLN138
AARG135
AALA136

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 404
ChainResidue
AVAL277
AARG279
AHOH506
AHOH515
AHOH537

site_idAC5
Number of Residues5
Detailsbinding site for residue CIT A 405
ChainResidue
AARG224
ASER242
AARG301
ALEU304
AHOH663

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN B 401
ChainResidue
BCYS256
BCYS259
BCYS280
BCYS283

site_idAC7
Number of Residues3
Detailsbinding site for residue GOL B 402
ChainResidue
BARG135
BALA136
BGLN138

site_idAC8
Number of Residues6
Detailsbinding site for residue SO4 B 403
ChainResidue
BVAL277
BARG279
BHOH502
BHOH503
BHOH512
BHOH532

site_idAC9
Number of Residues6
Detailsbinding site for residue CIT B 404
ChainResidue
BARG224
BSER242
BARG301
BLEU304
BHOH584
BHOH673

site_idAD1
Number of Residues3
Detailsbinding site for residue GOL D 101
ChainResidue
BLEU298
DARG2
DHOH202

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00236, ECO:0000269|PubMed:12186850, ECO:0000269|PubMed:16788062, ECO:0000269|PubMed:18794531
ChainResidueDetails
AHIS248
BHIS248

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:23897466
ChainResidueDetails
AGLY145
AGLN228
AGLY319
AASN344
BGLY145
BGLN228
BGLY319
BASN344

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:19535340, ECO:0000269|PubMed:23897466
ChainResidueDetails
ACYS256
ACYS259
ACYS280
ACYS283
BCYS256
BCYS259
BCYS280
BCYS283

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:Q8R104
ChainResidueDetails
ALYS122
BLYS122

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PDB entries from 2024-07-17

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