5Z8L
crystal structure of Arabidopsis thaliana EBS in complex with an H3K27me3 peptide
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000976 | molecular_function | transcription cis-regulatory region binding |
| A | 0003682 | molecular_function | chromatin binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0006325 | biological_process | chromatin organization |
| A | 0008270 | molecular_function | zinc ion binding |
| A | 0009791 | biological_process | post-embryonic development |
| A | 0009845 | biological_process | seed germination |
| A | 0009908 | biological_process | flower development |
| A | 0045814 | biological_process | negative regulation of gene expression, epigenetic |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0048579 | biological_process | negative regulation of long-day photoperiodism, flowering |
| A | 0140002 | molecular_function | histone H3K4me3 reader activity |
| A | 0140678 | molecular_function | molecular function inhibitor activity |
| A | 2000028 | biological_process | regulation of photoperiodism, flowering |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 501 |
| Chain | Residue |
| A | CYS149 |
| A | CYS151 |
| A | HIS172 |
| A | CYS175 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 502 |
| Chain | Residue |
| A | CYS164 |
| A | CYS167 |
| A | CYS191 |
| A | CYS194 |
Functional Information from PROSITE/UniProt
| site_id | PS01186 |
| Number of Residues | 16 |
| Details | EGF_2 EGF-like domain signature 2. CkCemPYnpddlmvqC |
| Chain | Residue | Details |
| A | CYS149-CYS164 |
| site_id | PS01359 |
| Number of Residues | 46 |
| Details | ZF_PHD_1 Zinc finger PHD-type signature. Ck.Cempynpddlm...................................VqCeg..Ckdw.YHpaCvgmtieeakkldh................................FvCaeC |
| Chain | Residue | Details |
| A | CYS149-CYS194 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1 |
| Details | Site: {"description":"Not N6-acetylated","evidences":[{"source":"PubMed","id":"15598823","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"15598823","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"14712277","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15598823","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17174094","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17439305","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19503079","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24626927","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"35298257","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
