5Z68
Structure of the recombination mediator protein RecF-ATP in RecFOR pathway
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000731 | biological_process | DNA synthesis involved in DNA repair |
A | 0003677 | molecular_function | DNA binding |
A | 0003697 | molecular_function | single-stranded DNA binding |
A | 0005524 | molecular_function | ATP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0006260 | biological_process | DNA replication |
A | 0006281 | biological_process | DNA repair |
A | 0006302 | biological_process | double-strand break repair |
A | 0009432 | biological_process | SOS response |
B | 0000731 | biological_process | DNA synthesis involved in DNA repair |
B | 0003677 | molecular_function | DNA binding |
B | 0003697 | molecular_function | single-stranded DNA binding |
B | 0005524 | molecular_function | ATP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0006260 | biological_process | DNA replication |
B | 0006281 | biological_process | DNA repair |
B | 0006302 | biological_process | double-strand break repair |
B | 0009432 | biological_process | SOS response |
C | 0000731 | biological_process | DNA synthesis involved in DNA repair |
C | 0003677 | molecular_function | DNA binding |
C | 0003697 | molecular_function | single-stranded DNA binding |
C | 0005524 | molecular_function | ATP binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0006260 | biological_process | DNA replication |
C | 0006281 | biological_process | DNA repair |
C | 0006302 | biological_process | double-strand break repair |
C | 0009432 | biological_process | SOS response |
D | 0000731 | biological_process | DNA synthesis involved in DNA repair |
D | 0003677 | molecular_function | DNA binding |
D | 0003697 | molecular_function | single-stranded DNA binding |
D | 0005524 | molecular_function | ATP binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0006260 | biological_process | DNA replication |
D | 0006281 | biological_process | DNA repair |
D | 0006302 | biological_process | double-strand break repair |
D | 0009432 | biological_process | SOS response |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 20 |
Details | binding site for residue ATP A 401 |
Chain | Residue |
A | ARG12 |
A | ASN38 |
A | ARG53 |
A | GLU59 |
A | VAL61 |
A | PHE63 |
A | MG408 |
A | HOH505 |
B | TYR281 |
B | SER282 |
B | SER283 |
A | ASN13 |
B | GLN286 |
A | LEU31 |
A | ASN32 |
A | ALA33 |
A | GLN34 |
A | GLY35 |
A | LYS36 |
A | SER37 |
site_id | AC2 |
Number of Residues | 2 |
Details | binding site for residue IMD A 402 |
Chain | Residue |
A | LYS56 |
A | MET57 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue IMD A 403 |
Chain | Residue |
A | ARG44 |
A | MET48 |
A | ARG50 |
A | PHE52 |
site_id | AC4 |
Number of Residues | 2 |
Details | binding site for residue IMD A 404 |
Chain | Residue |
A | THR106 |
A | HOH502 |
site_id | AC5 |
Number of Residues | 3 |
Details | binding site for residue IMD A 405 |
Chain | Residue |
A | ASN198 |
A | LYS205 |
A | ILE222 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue IMD A 406 |
Chain | Residue |
A | ASP145 |
A | VAL196 |
A | LYS203 |
A | GLU305 |
site_id | AC7 |
Number of Residues | 1 |
Details | binding site for residue IMD A 407 |
Chain | Residue |
A | HOH501 |
site_id | AC8 |
Number of Residues | 4 |
Details | binding site for residue MG A 408 |
Chain | Residue |
A | SER37 |
A | ATP401 |
A | HOH520 |
B | GLN284 |
site_id | AC9 |
Number of Residues | 21 |
Details | binding site for residue ATP B 401 |
Chain | Residue |
A | TYR281 |
A | SER283 |
A | GLN284 |
A | GLY285 |
A | GLN286 |
B | ARG12 |
B | ASN13 |
B | ASN32 |
B | GLN34 |
B | GLY35 |
B | LYS36 |
B | SER37 |
B | ASN38 |
B | ARG53 |
B | GLU59 |
B | VAL61 |
B | PHE63 |
B | MG407 |
B | HOH501 |
B | HOH502 |
B | HOH508 |
site_id | AD1 |
Number of Residues | 2 |
Details | binding site for residue IMD B 402 |
Chain | Residue |
B | LYS15 |
B | LYS16 |
site_id | AD2 |
Number of Residues | 1 |
Details | binding site for residue IMD B 403 |
Chain | Residue |
B | MET57 |
site_id | AD3 |
Number of Residues | 3 |
Details | binding site for residue IMD B 404 |
Chain | Residue |
B | ARG44 |
B | ARG50 |
B | PHE52 |
site_id | AD4 |
Number of Residues | 3 |
Details | binding site for residue IMD B 405 |
Chain | Residue |
B | LYS94 |
B | THR106 |
B | HOH509 |
site_id | AD5 |
Number of Residues | 3 |
Details | binding site for residue IMD B 406 |
Chain | Residue |
B | GLY129 |
B | PRO130 |
B | SER131 |
site_id | AD6 |
Number of Residues | 6 |
Details | binding site for residue MG B 407 |
Chain | Residue |
B | SER37 |
B | ASP315 |
B | ASP316 |
B | ATP401 |
B | HOH501 |
B | HOH502 |
site_id | AD7 |
Number of Residues | 21 |
Details | binding site for residue ATP C 401 |
Chain | Residue |
D | GLN286 |
C | ARG12 |
C | ASN13 |
C | ASN32 |
C | ALA33 |
C | GLN34 |
C | GLY35 |
C | LYS36 |
C | SER37 |
C | ASN38 |
C | ARG53 |
C | GLU59 |
C | VAL61 |
C | LYS62 |
C | PHE63 |
C | ASP316 |
C | MG406 |
C | HOH501 |
D | TYR281 |
D | SER283 |
D | GLY285 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue IMD C 402 |
Chain | Residue |
C | ARG44 |
C | ARG50 |
C | PHE52 |
C | ALA139 |
site_id | AD9 |
Number of Residues | 2 |
Details | binding site for residue IMD C 403 |
Chain | Residue |
C | LYS15 |
C | LYS16 |
site_id | AE1 |
Number of Residues | 3 |
Details | binding site for residue IMD C 404 |
Chain | Residue |
C | GLY129 |
C | PRO130 |
C | SER131 |
site_id | AE2 |
Number of Residues | 1 |
Details | binding site for residue IMD C 405 |
Chain | Residue |
C | LEU299 |
site_id | AE3 |
Number of Residues | 4 |
Details | binding site for residue MG C 406 |
Chain | Residue |
C | SER37 |
C | ATP401 |
C | HOH501 |
C | HOH508 |
site_id | AE4 |
Number of Residues | 18 |
Details | binding site for residue ATP D 401 |
Chain | Residue |
C | SER283 |
C | GLN284 |
C | GLY285 |
D | ARG12 |
D | ASN13 |
D | LEU31 |
D | ASN32 |
D | GLN34 |
D | GLY35 |
D | LYS36 |
D | SER37 |
D | ASN38 |
D | ARG53 |
D | GLU59 |
D | VAL61 |
D | PHE63 |
D | ASP316 |
D | MG408 |
site_id | AE5 |
Number of Residues | 3 |
Details | binding site for residue IMD D 402 |
Chain | Residue |
D | ARG44 |
D | ARG50 |
D | PHE52 |
site_id | AE6 |
Number of Residues | 1 |
Details | binding site for residue IMD D 403 |
Chain | Residue |
D | THR106 |
site_id | AE7 |
Number of Residues | 2 |
Details | binding site for residue IMD D 404 |
Chain | Residue |
D | LYS56 |
D | MET57 |
site_id | AE8 |
Number of Residues | 4 |
Details | binding site for residue IMD D 405 |
Chain | Residue |
D | GLY129 |
D | PRO130 |
D | SER131 |
D | IMD406 |
site_id | AE9 |
Number of Residues | 3 |
Details | binding site for residue IMD D 406 |
Chain | Residue |
D | PRO130 |
D | ARG134 |
D | IMD405 |
site_id | AF1 |
Number of Residues | 1 |
Details | binding site for residue IMD D 407 |
Chain | Residue |
D | LYS332 |
site_id | AF2 |
Number of Residues | 2 |
Details | binding site for residue MG D 408 |
Chain | Residue |
D | SER37 |
D | ATP401 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00365 |
Chain | Residue | Details |
A | GLY30 | |
B | GLY30 | |
C | GLY30 | |
D | GLY30 |