Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5Z68

Structure of the recombination mediator protein RecF-ATP in RecFOR pathway

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0000731	biological_process	DNA synthesis involved in DNA repair
A	0003677	molecular_function	DNA binding
A	0003697	molecular_function	single-stranded DNA binding
A	0005524	molecular_function	ATP binding
A	0005737	cellular_component	cytoplasm
A	0006260	biological_process	DNA replication
A	0006281	biological_process	DNA repair
A	0006302	biological_process	double-strand break repair
A	0006974	biological_process	DNA damage response
A	0009432	biological_process	SOS response
B	0000166	molecular_function	nucleotide binding
B	0000731	biological_process	DNA synthesis involved in DNA repair
B	0003677	molecular_function	DNA binding
B	0003697	molecular_function	single-stranded DNA binding
B	0005524	molecular_function	ATP binding
B	0005737	cellular_component	cytoplasm
B	0006260	biological_process	DNA replication
B	0006281	biological_process	DNA repair
B	0006302	biological_process	double-strand break repair
B	0006974	biological_process	DNA damage response
B	0009432	biological_process	SOS response
C	0000166	molecular_function	nucleotide binding
C	0000731	biological_process	DNA synthesis involved in DNA repair
C	0003677	molecular_function	DNA binding
C	0003697	molecular_function	single-stranded DNA binding
C	0005524	molecular_function	ATP binding
C	0005737	cellular_component	cytoplasm
C	0006260	biological_process	DNA replication
C	0006281	biological_process	DNA repair
C	0006302	biological_process	double-strand break repair
C	0006974	biological_process	DNA damage response
C	0009432	biological_process	SOS response
D	0000166	molecular_function	nucleotide binding
D	0000731	biological_process	DNA synthesis involved in DNA repair
D	0003677	molecular_function	DNA binding
D	0003697	molecular_function	single-stranded DNA binding
D	0005524	molecular_function	ATP binding
D	0005737	cellular_component	cytoplasm
D	0006260	biological_process	DNA replication
D	0006281	biological_process	DNA repair
D	0006302	biological_process	double-strand break repair
D	0006974	biological_process	DNA damage response
D	0009432	biological_process	SOS response

Functional Information from PDB Data

site_id	AC1
Number of Residues	20
Details	binding site for residue ATP A 401

Chain	Residue
A	ARG12
A	ASN38
A	ARG53
A	GLU59
A	VAL61
A	PHE63
A	MG408
A	HOH505
B	TYR281
B	SER282
B	SER283
A	ASN13
B	GLN286
A	LEU31
A	ASN32
A	ALA33
A	GLN34
A	GLY35
A	LYS36
A	SER37

site_id	AC2
Number of Residues	2
Details	binding site for residue IMD A 402

Chain	Residue
A	LYS56
A	MET57

site_id	AC3
Number of Residues	4
Details	binding site for residue IMD A 403

Chain	Residue
A	ARG44
A	MET48
A	ARG50
A	PHE52

site_id	AC4
Number of Residues	2
Details	binding site for residue IMD A 404

Chain	Residue
A	THR106
A	HOH502

site_id	AC5
Number of Residues	3
Details	binding site for residue IMD A 405

Chain	Residue
A	ASN198
A	LYS205
A	ILE222

site_id	AC6
Number of Residues	4
Details	binding site for residue IMD A 406

Chain	Residue
A	ASP145
A	VAL196
A	LYS203
A	GLU305

site_id	AC7
Number of Residues	1
Details	binding site for residue IMD A 407

Chain	Residue
A	HOH501

site_id	AC8
Number of Residues	4
Details	binding site for residue MG A 408

Chain	Residue
A	SER37
A	ATP401
A	HOH520
B	GLN284

site_id	AC9
Number of Residues	21
Details	binding site for residue ATP B 401

Chain	Residue
A	TYR281
A	SER283
A	GLN284
A	GLY285
A	GLN286
B	ARG12
B	ASN13
B	ASN32
B	GLN34
B	GLY35
B	LYS36
B	SER37
B	ASN38
B	ARG53
B	GLU59
B	VAL61
B	PHE63
B	MG407
B	HOH501
B	HOH502
B	HOH508

site_id	AD1
Number of Residues	2
Details	binding site for residue IMD B 402

Chain	Residue
B	LYS15
B	LYS16

site_id	AD2
Number of Residues	1
Details	binding site for residue IMD B 403

Chain	Residue
B	MET57

site_id	AD3
Number of Residues	3
Details	binding site for residue IMD B 404

Chain	Residue
B	ARG44
B	ARG50
B	PHE52

site_id	AD4
Number of Residues	3
Details	binding site for residue IMD B 405

Chain	Residue
B	LYS94
B	THR106
B	HOH509

site_id	AD5
Number of Residues	3
Details	binding site for residue IMD B 406

Chain	Residue
B	GLY129
B	PRO130
B	SER131

site_id	AD6
Number of Residues	6
Details	binding site for residue MG B 407

Chain	Residue
B	SER37
B	ASP315
B	ASP316
B	ATP401
B	HOH501
B	HOH502

site_id	AD7
Number of Residues	21
Details	binding site for residue ATP C 401

Chain	Residue
D	GLN286
C	ARG12
C	ASN13
C	ASN32
C	ALA33
C	GLN34
C	GLY35
C	LYS36
C	SER37
C	ASN38
C	ARG53
C	GLU59
C	VAL61
C	LYS62
C	PHE63
C	ASP316
C	MG406
C	HOH501
D	TYR281
D	SER283
D	GLY285

site_id	AD8
Number of Residues	4
Details	binding site for residue IMD C 402

Chain	Residue
C	ARG44
C	ARG50
C	PHE52
C	ALA139

site_id	AD9
Number of Residues	2
Details	binding site for residue IMD C 403

Chain	Residue
C	LYS15
C	LYS16

site_id	AE1
Number of Residues	3
Details	binding site for residue IMD C 404

Chain	Residue
C	GLY129
C	PRO130
C	SER131

site_id	AE2
Number of Residues	1
Details	binding site for residue IMD C 405

Chain	Residue
C	LEU299

site_id	AE3
Number of Residues	4
Details	binding site for residue MG C 406

Chain	Residue
C	SER37
C	ATP401
C	HOH501
C	HOH508

site_id	AE4
Number of Residues	18
Details	binding site for residue ATP D 401

Chain	Residue
C	SER283
C	GLN284
C	GLY285
D	ARG12
D	ASN13
D	LEU31
D	ASN32
D	GLN34
D	GLY35
D	LYS36
D	SER37
D	ASN38
D	ARG53
D	GLU59
D	VAL61
D	PHE63
D	ASP316
D	MG408

site_id	AE5
Number of Residues	3
Details	binding site for residue IMD D 402

Chain	Residue
D	ARG44
D	ARG50
D	PHE52

site_id	AE6
Number of Residues	1
Details	binding site for residue IMD D 403

Chain	Residue
D	THR106

site_id	AE7
Number of Residues	2
Details	binding site for residue IMD D 404

Chain	Residue
D	LYS56
D	MET57

site_id	AE8
Number of Residues	4
Details	binding site for residue IMD D 405

Chain	Residue
D	GLY129
D	PRO130
D	SER131
D	IMD406

site_id	AE9
Number of Residues	3
Details	binding site for residue IMD D 406

Chain	Residue
D	PRO130
D	ARG134
D	IMD405

site_id	AF1
Number of Residues	1
Details	binding site for residue IMD D 407

Chain	Residue
D	LYS332

site_id	AF2
Number of Residues	2
Details	binding site for residue MG D 408

Chain	Residue
D	SER37
D	ATP401

Functional Information from PROSITE/UniProt

site_id	PS00617
Number of Residues	21
Details	RECF_1 RecF protein signature 1. FspedieIIkEGPsrRRkYLD

Chain	Residue	Details
A	PHE118-ASP138

site_id	PS00618
Number of Residues	19
Details	RECF_2 RecF protein signature 2. VLlLDDVmsELDdnRkkyI

Chain	Residue	Details
A	VAL311-ILE329

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	28
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00365","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)