5Z5E
Crystal structure of the Glycyl-tRNA synthetase (GlyRS) in Nanoarchaeum equitans
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
| A | 0004820 | molecular_function | glycine-tRNA ligase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006412 | biological_process | translation |
| A | 0006418 | biological_process | tRNA aminoacylation for protein translation |
| A | 0006426 | biological_process | glycyl-tRNA aminoacylation |
| A | 0016874 | molecular_function | ligase activity |
| A | 0044281 | biological_process | small molecule metabolic process |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
| B | 0004820 | molecular_function | glycine-tRNA ligase activity |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006412 | biological_process | translation |
| B | 0006418 | biological_process | tRNA aminoacylation for protein translation |
| B | 0006426 | biological_process | glycyl-tRNA aminoacylation |
| B | 0016874 | molecular_function | ligase activity |
| B | 0044281 | biological_process | small molecule metabolic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 A 601 |
| Chain | Residue |
| A | ARG223 |
| A | ARG228 |
| A | LYS332 |
| A | ARG378 |
| A | HOH707 |
| A | HOH709 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 602 |
| Chain | Residue |
| A | HOH804 |
| A | ARG217 |
| A | GLN234 |
| A | HOH794 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 603 |
| Chain | Residue |
| A | ARG223 |
| A | GLN224 |
| A | HOH736 |
| A | HOH761 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | binding site for residue GOL A 604 |
| Chain | Residue |
| A | ILE22 |
| A | ALA23 |
| A | ARG230 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 B 601 |
| Chain | Residue |
| B | LYS4 |
| B | ARG223 |
| B | GLN224 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 B 602 |
| Chain | Residue |
| B | ARG223 |
| B | ARG228 |
| B | LYS332 |
| B | ARG378 |
| B | HOH704 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 B 603 |
| Chain | Residue |
| B | SER161 |
| B | GLU162 |
| B | ARG269 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 B 604 |
| Chain | Residue |
| B | ARG217 |
| B | HOH738 |
| B | HOH746 |
| B | HOH751 |
| site_id | AC9 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 B 605 |
| Chain | Residue |
| A | ARG202 |
| B | ARG463 |
| site_id | AD1 |
| Number of Residues | 2 |
| Details | binding site for residue GOL B 606 |
| Chain | Residue |
| B | ALA23 |
| B | ARG230 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 607 |
| Chain | Residue |
| B | GLU396 |
| B | ASP398 |
| B | ASN399 |
| B | SER456 |
| B | ILE457 |
| B | GLY458 |
| site_id | AD3 |
| Number of Residues | 1 |
| Details | binding site for residue GOL B 608 |
| Chain | Residue |
| B | LEU388 |
