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5Z3N

Structure of large fragment of DNA Polymerase I from Thermus aquaticus Host-Guest complex with the unnatural base 5fC pair with dA

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MG A 901
ChainResidue
AASP610
ATYR611
AASP785
AMG902
ADGT903

site_idAC2
Number of Residues7
Detailsbinding site for residue MG A 902
ChainResidue
AHOH1090
BDOC112
BHOH318
AASP610
AASP785
AMG901
ADGT903

site_idAC3
Number of Residues24
Detailsbinding site for residue DGT A 903
ChainResidue
AARG573
AASP610
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659
AARG660
ALYS663
APHE667
ATYR671
AASP785
AMG901
AMG902
AHOH1084
AHOH1194
AHOH1199
AHOH1271
BDOC112
BHOH318
CDC204
CDG205

site_idAC4
Number of Residues11
Detailsbinding site for residue GOL A 904
ChainResidue
AGLU462
AGLU466
ALEU538
ALYS793
AGLU825
AGOL906
AHOH1001
AHOH1005
AHOH1006
AHOH1015
AHOH1281

site_idAC5
Number of Residues9
Detailsbinding site for residue GOL A 905
ChainResidue
ATHR544
ATYR545
APRO579
AASN580
AASN583
AHOH1014
AHOH1212
CDC209
CDC210

site_idAC6
Number of Residues9
Detailsbinding site for residue GOL A 906
ChainResidue
AGLU462
ALEU590
AARG593
AGLU825
AGOL904
AHOH1001
AHOH1200
AHOH1227
AHOH1281

site_idAC7
Number of Residues6
Detailsbinding site for residue GOL A 907
ChainResidue
AARG425
ATRP428
APHE724
ATYR811
AHOH1023
AHOH1215

site_idAC8
Number of Residues5
Detailsbinding site for residue MG B 201
ChainResidue
BHOH302
BHOH306
BHOH312
BHOH333
CHOH447

site_idAC9
Number of Residues4
Detailsbinding site for residue GOL C 301
ChainResidue
AARG728
CDG206
CDC207
CHOH404

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

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PDB entries from 2024-07-24

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