5YZO
Crystal structure of S9 peptidase mutant (S514A) from Deinococcus radiodurans R1
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004252 | molecular_function | serine-type endopeptidase activity |
| A | 0006508 | biological_process | proteolysis |
| A | 0008233 | molecular_function | peptidase activity |
| A | 0008236 | molecular_function | serine-type peptidase activity |
| A | 0016787 | molecular_function | hydrolase activity |
| B | 0004252 | molecular_function | serine-type endopeptidase activity |
| B | 0006508 | biological_process | proteolysis |
| B | 0008233 | molecular_function | peptidase activity |
| B | 0008236 | molecular_function | serine-type peptidase activity |
| B | 0016787 | molecular_function | hydrolase activity |
| C | 0004252 | molecular_function | serine-type endopeptidase activity |
| C | 0006508 | biological_process | proteolysis |
| C | 0008233 | molecular_function | peptidase activity |
| C | 0008236 | molecular_function | serine-type peptidase activity |
| C | 0016787 | molecular_function | hydrolase activity |
| D | 0004252 | molecular_function | serine-type endopeptidase activity |
| D | 0006508 | biological_process | proteolysis |
| D | 0008233 | molecular_function | peptidase activity |
| D | 0008236 | molecular_function | serine-type peptidase activity |
| D | 0016787 | molecular_function | hydrolase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue DMS A 701 |
| Chain | Residue |
| A | GLY434 |
| A | GLY435 |
| A | ALA514 |
| A | ARG537 |
| A | HIS629 |
| A | ARG633 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue DMS A 702 |
| Chain | Residue |
| A | HOH1065 |
| A | VAL310 |
| A | GLY311 |
| A | SER634 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue DMS A 703 |
| Chain | Residue |
| A | THR119 |
| A | HIS120 |
| A | PHE121 |
| A | LEU188 |
| A | HOH947 |
| site_id | AC4 |
| Number of Residues | 10 |
| Details | binding site for residue GOL A 704 |
| Chain | Residue |
| A | PRO161 |
| A | VAL162 |
| A | TYR163 |
| A | ARG164 |
| A | GLY547 |
| A | THR548 |
| A | SER549 |
| A | ASP550 |
| A | HOH973 |
| A | HOH1040 |
| site_id | AC5 |
| Number of Residues | 8 |
| Details | binding site for residue GOL A 705 |
| Chain | Residue |
| A | THR528 |
| A | PHE530 |
| A | GLN531 |
| A | LYS586 |
| A | THR587 |
| A | PRO588 |
| A | HOH856 |
| A | HOH977 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | binding site for residue DMS B 701 |
| Chain | Residue |
| B | GLY434 |
| B | GLY435 |
| B | ALA514 |
| B | ARG537 |
| B | HIS629 |
| B | ARG633 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | binding site for residue DMS B 702 |
| Chain | Residue |
| B | VAL310 |
| B | GLY311 |
| B | SER634 |
| B | HOH1131 |
| site_id | AC8 |
| Number of Residues | 8 |
| Details | binding site for residue GOL B 703 |
| Chain | Residue |
| B | THR528 |
| B | PHE530 |
| B | GLN531 |
| B | LYS586 |
| B | THR587 |
| B | PRO588 |
| B | HOH845 |
| B | HOH888 |
| site_id | AC9 |
| Number of Residues | 12 |
| Details | binding site for residue GOL B 704 |
| Chain | Residue |
| B | TYR440 |
| B | THR445 |
| B | GLU447 |
| B | PHE448 |
| B | ARG537 |
| B | ARG643 |
| B | HOH852 |
| B | HOH920 |
| B | HOH934 |
| B | HOH1011 |
| B | HOH1135 |
| B | HOH1280 |
| site_id | AD1 |
| Number of Residues | 7 |
| Details | binding site for residue DMS C 701 |
| Chain | Residue |
| C | GLY434 |
| C | ALA514 |
| C | ARG537 |
| C | HIS629 |
| C | ARG633 |
| C | HOH1189 |
| C | HOH1309 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue DMS C 702 |
| Chain | Residue |
| C | VAL310 |
| C | GLY311 |
| C | SER634 |
| C | HOH1188 |
| site_id | AD3 |
| Number of Residues | 8 |
| Details | binding site for residue GOL C 703 |
| Chain | Residue |
| C | THR528 |
| C | PHE530 |
| C | GLN531 |
| C | LYS586 |
| C | THR587 |
| C | PRO588 |
| C | HOH892 |
| C | HOH1227 |
| site_id | AD4 |
| Number of Residues | 10 |
| Details | binding site for residue GOL C 704 |
| Chain | Residue |
| C | TYR440 |
| C | THR445 |
| C | GLU447 |
| C | ARG537 |
| C | ARG643 |
| C | HOH896 |
| C | HOH913 |
| C | HOH951 |
| C | HOH960 |
| C | HOH1117 |
| site_id | AD5 |
| Number of Residues | 5 |
| Details | binding site for residue DMS D 701 |
| Chain | Residue |
| D | GLY434 |
| D | ALA514 |
| D | ARG537 |
| D | HIS629 |
| D | ARG633 |
| site_id | AD6 |
| Number of Residues | 4 |
| Details | binding site for residue DMS D 702 |
| Chain | Residue |
| D | SER634 |
| D | HOH1187 |
| D | VAL310 |
| D | GLY311 |
