5YWX
Crystal structure of hematopoietic prostaglandin D synthase in complex with F092
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0004364 | molecular_function | glutathione transferase activity |
| A | 0004667 | molecular_function | prostaglandin-D synthase activity |
| A | 0005509 | molecular_function | calcium ion binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006693 | biological_process | prostaglandin metabolic process |
| A | 0006749 | biological_process | glutathione metabolic process |
| A | 0007165 | biological_process | signal transduction |
| A | 0007626 | biological_process | locomotory behavior |
| A | 0019371 | biological_process | cyclooxygenase pathway |
| A | 0042803 | molecular_function | protein homodimerization activity |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0004364 | molecular_function | glutathione transferase activity |
| B | 0004667 | molecular_function | prostaglandin-D synthase activity |
| B | 0005509 | molecular_function | calcium ion binding |
| B | 0005515 | molecular_function | protein binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006693 | biological_process | prostaglandin metabolic process |
| B | 0006749 | biological_process | glutathione metabolic process |
| B | 0007165 | biological_process | signal transduction |
| B | 0007626 | biological_process | locomotory behavior |
| B | 0019371 | biological_process | cyclooxygenase pathway |
| B | 0042803 | molecular_function | protein homodimerization activity |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0004364 | molecular_function | glutathione transferase activity |
| C | 0004667 | molecular_function | prostaglandin-D synthase activity |
| C | 0005509 | molecular_function | calcium ion binding |
| C | 0005515 | molecular_function | protein binding |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005829 | cellular_component | cytosol |
| C | 0006693 | biological_process | prostaglandin metabolic process |
| C | 0006749 | biological_process | glutathione metabolic process |
| C | 0007165 | biological_process | signal transduction |
| C | 0007626 | biological_process | locomotory behavior |
| C | 0019371 | biological_process | cyclooxygenase pathway |
| C | 0042803 | molecular_function | protein homodimerization activity |
| D | 0000287 | molecular_function | magnesium ion binding |
| D | 0004364 | molecular_function | glutathione transferase activity |
| D | 0004667 | molecular_function | prostaglandin-D synthase activity |
| D | 0005509 | molecular_function | calcium ion binding |
| D | 0005515 | molecular_function | protein binding |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005829 | cellular_component | cytosol |
| D | 0006693 | biological_process | prostaglandin metabolic process |
| D | 0006749 | biological_process | glutathione metabolic process |
| D | 0007165 | biological_process | signal transduction |
| D | 0007626 | biological_process | locomotory behavior |
| D | 0019371 | biological_process | cyclooxygenase pathway |
| D | 0042803 | molecular_function | protein homodimerization activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 14 |
| Details | binding site for residue GSH A 301 |
| Chain | Residue |
| A | TYR8 |
| A | HOH461 |
| A | HOH468 |
| A | HOH502 |
| A | HOH514 |
| B | ASP97 |
| A | ARG14 |
| A | TRP39 |
| A | LYS50 |
| A | ILE51 |
| A | PRO52 |
| A | GLN63 |
| A | SER64 |
| A | 93C302 |
| site_id | AC2 |
| Number of Residues | 14 |
| Details | binding site for residue 93C A 302 |
| Chain | Residue |
| A | MET11 |
| A | GLY13 |
| A | ARG14 |
| A | GLN36 |
| A | MET99 |
| A | TRP104 |
| A | ALA105 |
| A | TYR152 |
| A | LEU199 |
| A | GSH301 |
| A | HOH421 |
| A | HOH442 |
| A | HOH503 |
| B | GLY58 |
| site_id | AC3 |
| Number of Residues | 9 |
| Details | binding site for residue GOL A 303 |
| Chain | Residue |
| A | GLN196 |
| A | THR197 |
| A | HOH415 |
| A | HOH444 |
| A | HOH505 |
| A | HOH542 |
| D | GLN28 |
| D | TYR29 |
| D | GOL303 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | binding site for residue GOL A 304 |
| Chain | Residue |
| A | GLN28 |
| A | TYR29 |
| A | HOH428 |
| A | HOH520 |
| D | GLN196 |
| D | THR197 |
| D | LYS198 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue MG B 201 |
| Chain | Residue |
| A | HOH456 |
| A | HOH488 |
| A | HOH529 |
| B | HOH304 |
| B | HOH322 |
| B | HOH329 |
| site_id | AC6 |
| Number of Residues | 13 |
| Details | binding site for residue GSH B 202 |
| Chain | Residue |
| A | ASP97 |
| B | TYR8 |
| B | ARG14 |
| B | TRP39 |
| B | LYS43 |
| B | GLY49 |
| B | LYS50 |
| B | ILE51 |
| B | PRO52 |
| B | GLN63 |
| B | SER64 |
| B | HOH328 |
| B | HOH350 |
| site_id | AC7 |
| Number of Residues | 8 |
| Details | binding site for residue 93C B 203 |
| Chain | Residue |
| B | GLY13 |
| B | ARG14 |
| B | GLN36 |
| B | MET99 |
| B | TRP104 |
| B | ALA105 |
| B | TYR152 |
| B | HOH321 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | binding site for residue MG C 201 |
| Chain | Residue |
| C | HOH322 |
| C | HOH329 |
| C | HOH334 |
| D | HOH452 |
| D | HOH483 |
| D | HOH485 |
| site_id | AC9 |
| Number of Residues | 13 |
| Details | binding site for residue GSH C 202 |
| Chain | Residue |
| C | TYR8 |
| C | ARG14 |
| C | TRP39 |
| C | LYS43 |
| C | LYS50 |
| C | ILE51 |
| C | PRO52 |
| C | GLN63 |
| C | SER64 |
| C | 93C203 |
| C | HOH325 |
| C | HOH336 |
| D | ASP97 |
| site_id | AD1 |
| Number of Residues | 11 |
| Details | binding site for residue 93C C 203 |
| Chain | Residue |
| C | GSH202 |
| C | HOH310 |
| C | MET11 |
| C | GLY13 |
| C | ARG14 |
| C | GLN36 |
| C | MET99 |
| C | TRP104 |
| C | ALA105 |
| C | TYR152 |
| C | LEU199 |
| site_id | AD2 |
| Number of Residues | 12 |
| Details | binding site for residue GSH D 301 |
| Chain | Residue |
| C | ASP97 |
| D | TYR8 |
| D | ARG14 |
| D | TRP39 |
| D | LYS50 |
| D | ILE51 |
| D | PRO52 |
| D | GLN63 |
| D | SER64 |
| D | 93C302 |
| D | HOH430 |
| D | HOH459 |
| site_id | AD3 |
| Number of Residues | 13 |
| Details | binding site for residue 93C D 302 |
| Chain | Residue |
| C | LEU59 |
| D | MET11 |
| D | GLY13 |
| D | ARG14 |
| D | GLN36 |
| D | MET99 |
| D | TRP104 |
| D | ALA105 |
| D | TYR152 |
| D | LEU199 |
| D | GSH301 |
| D | HOH416 |
| D | HOH446 |
| site_id | AD4 |
| Number of Residues | 7 |
| Details | binding site for residue GOL D 303 |
| Chain | Residue |
| A | LYS198 |
| A | GOL303 |
| D | GLN28 |
| D | TYR29 |
| D | HOH415 |
| D | HOH436 |
| D | HOH540 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 308 |
| Details | Domain: {"description":"GST N-terminal"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 472 |
| Details | Domain: {"description":"GST C-terminal"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 24 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"12627223","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15113825","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16547010","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18341273","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19939518","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |






