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5YU6

CRYSTAL STRUCTURE OF EXPORTIN-5:RANGTP COMPLEX

Functional Information from GO Data
ChainGOidnamespacecontents
A0000049molecular_functiontRNA binding
A0003723molecular_functionRNA binding
A0003729molecular_functionmRNA binding
A0005049molecular_functionnuclear export signal receptor activity
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006405biological_processRNA export from nucleus
A0006611biological_processprotein export from nucleus
A0006886biological_processintracellular protein transport
A0010586biological_processmiRNA metabolic process
A0015031biological_processprotein transport
A0016442cellular_componentRISC complex
A0031047biological_processregulatory ncRNA-mediated gene silencing
A0031267molecular_functionsmall GTPase binding
A0035281biological_processpre-miRNA export from nucleus
A0042565cellular_componentRNA nuclear export complex
A0070883molecular_functionpre-miRNA binding
A1905172molecular_functionRISC complex binding
B0000054biological_processribosomal subunit export from nucleus
B0000070biological_processmitotic sister chromatid segregation
B0000287molecular_functionmagnesium ion binding
B0003924molecular_functionGTPase activity
B0005049molecular_functionnuclear export signal receptor activity
B0005515molecular_functionprotein binding
B0005525molecular_functionGTP binding
B0005634cellular_componentnucleus
B0005635cellular_componentnuclear envelope
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006606biological_processprotein import into nucleus
B0006611biological_processprotein export from nucleus
B0006913biological_processnucleocytoplasmic transport
B0015031biological_processprotein transport
B0016442cellular_componentRISC complex
B0016787molecular_functionhydrolase activity
B0032991cellular_componentprotein-containing complex
B0035281biological_processpre-miRNA export from nucleus
B0042470cellular_componentmelanosome
B0046039biological_processGTP metabolic process
B0046827biological_processpositive regulation of protein export from nucleus
B0046872molecular_functionmetal ion binding
B0051301biological_processcell division
B0061015biological_processsnRNA import into nucleus
B0070883molecular_functionpre-miRNA binding
B1905172molecular_functionRISC complex binding
C0000049molecular_functiontRNA binding
C0003723molecular_functionRNA binding
C0003729molecular_functionmRNA binding
C0005049molecular_functionnuclear export signal receptor activity
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005654cellular_componentnucleoplasm
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0006405biological_processRNA export from nucleus
C0006611biological_processprotein export from nucleus
C0006886biological_processintracellular protein transport
C0010586biological_processmiRNA metabolic process
C0015031biological_processprotein transport
C0016442cellular_componentRISC complex
C0031047biological_processregulatory ncRNA-mediated gene silencing
C0031267molecular_functionsmall GTPase binding
C0035281biological_processpre-miRNA export from nucleus
C0042565cellular_componentRNA nuclear export complex
C0070883molecular_functionpre-miRNA binding
C1905172molecular_functionRISC complex binding
D0000054biological_processribosomal subunit export from nucleus
D0000070biological_processmitotic sister chromatid segregation
D0000287molecular_functionmagnesium ion binding
D0003924molecular_functionGTPase activity
D0005049molecular_functionnuclear export signal receptor activity
D0005515molecular_functionprotein binding
D0005525molecular_functionGTP binding
D0005634cellular_componentnucleus
D0005635cellular_componentnuclear envelope
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0006606biological_processprotein import into nucleus
D0006611biological_processprotein export from nucleus
D0006913biological_processnucleocytoplasmic transport
D0015031biological_processprotein transport
D0016442cellular_componentRISC complex
D0016787molecular_functionhydrolase activity
D0032991cellular_componentprotein-containing complex
D0035281biological_processpre-miRNA export from nucleus
D0042470cellular_componentmelanosome
D0046039biological_processGTP metabolic process
D0046827biological_processpositive regulation of protein export from nucleus
D0046872molecular_functionmetal ion binding
D0051301biological_processcell division
D0061015biological_processsnRNA import into nucleus
D0070883molecular_functionpre-miRNA binding
D1905172molecular_functionRISC complex binding
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue GTP B 301
ChainResidue
BGLY20
BTYR39
BALA41
BTHR42
BALA67
BGLY68
BASN122
BLYS123
BASP125
BSER150
BALA151
BTHR21
BLYS152
BMG302
BGLY22
BLYS23
BTHR24
BTHR25
BGLU36
BLYS37
BLYS38

site_idAC2
Number of Residues5
Detailsbinding site for residue MG B 302
ChainResidue
BTHR24
BTHR42
BASP65
BTHR66
BGTP301

site_idAC3
Number of Residues24
Detailsbinding site for residue GTP D 301
ChainResidue
DASP18
DGLY19
DGLY20
DTHR21
DGLY22
DLYS23
DTHR24
DTHR25
DPHE35
DGLU36
DLYS37
DLYS38
DTYR39
DALA41
DTHR42
DGLY68
DASN122
DLYS123
DASP125
DILE126
DSER150
DALA151
DLYS152
DMG302

site_idAC4
Number of Residues3
Detailsbinding site for residue MG D 302
ChainResidue
DTHR24
DTHR42
DGTP301

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsSITE: Pre-miRNA binding => ECO:0000269|PubMed:19965479
ChainResidueDetails
AALA441
AARG448
AARG718
AGLN1045
CALA441
CARG448
CARG718
CGLN1045

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: N-acetylalanine => ECO:0007744|PubMed:19413330, ECO:0007744|PubMed:22223895
ChainResidueDetails
AALA2
CALA2

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
ALYS396
CLYS396

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18691976
ChainResidueDetails
ASER826
CSER826

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: N-acetylalanine => ECO:0000250|UniProtKB:P62826
ChainResidueDetails
BALA2
DALA2

site_idSWS_FT_FI6
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:P62826
ChainResidueDetails
BTHR24
DTHR24

site_idSWS_FT_FI7
Number of Residues8
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P62826
ChainResidueDetails
BLYS99
BLYS134
DLYS37
DLYS60
DLYS99
DLYS134
BLYS37
BLYS60

site_idSWS_FT_FI8
Number of Residues2
DetailsMOD_RES: N6-acetyllysine; alternate => ECO:0000250|UniProtKB:P62826
ChainResidueDetails
BLYS71
DLYS71

site_idSWS_FT_FI9
Number of Residues2
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P62827
ChainResidueDetails
BLYS159
DLYS159

site_idSWS_FT_FI10
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:P62826
ChainResidueDetails
BLYS71
DLYS71

site_idSWS_FT_FI11
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0000250|UniProtKB:P62826
ChainResidueDetails
BLYS152
DLYS152

220472

PDB entries from 2024-05-29

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