5YKH
Crystal structure of the engineered nine-repeat PUF domain
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003723 | molecular_function | RNA binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | binding site for residue PO4 A 401 |
| Chain | Residue |
| A | ARG192 |
| A | HIS210 |
| A | HIS248 |
| A | HOH517 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue PO4 A 402 |
| Chain | Residue |
| A | SER3 |
| A | ARG4 |
| A | LEU5 |
| A | HIS25 |
| A | HOH502 |
| site_id | AC3 |
| Number of Residues | 2 |
| Details | binding site for residue PO4 A 403 |
| Chain | Residue |
| A | ARG37 |
| A | LYS77 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 35 |
| Details | Repeat: {"description":"Pumilio 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00317","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21397187","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 35 |
| Details | Repeat: {"description":"Pumilio 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00317","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21397187","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 35 |
| Details | Repeat: {"description":"Pumilio 3","evidences":[{"source":"PROSITE-ProRule","id":"PRU00317","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21397187","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 35 |
| Details | Repeat: {"description":"Pumilio 4","evidences":[{"source":"PROSITE-ProRule","id":"PRU00317","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21397187","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 35 |
| Details | Repeat: {"description":"Pumilio 6","evidences":[{"source":"PROSITE-ProRule","id":"PRU00317","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21397187","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 35 |
| Details | Repeat: {"description":"Pumilio 7","evidences":[{"source":"PROSITE-ProRule","id":"PRU00317","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21397187","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 12 |
| Details | Region: {"description":"Adenine-nucleotide binding in RNA target","evidences":[{"source":"PubMed","id":"18328718","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 4 |
| Details | Region: {"description":"Uracil-nucleotide binding in RNA target","evidences":[{"source":"PubMed","id":"18328718","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 4 |
| Details | Region: {"description":"Non-specific-nucleotide binding in RNA target","evidences":[{"source":"PubMed","id":"18328718","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 4 |
| Details | Region: {"description":"Uracil-nucleotide binding in RNA target","evidences":[{"source":"PubMed","id":"18328718","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21397187","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3BSB","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 4 |
| Details | Region: {"description":"Guanine-nucleotide binding in RNA target","evidences":[{"source":"PubMed","id":"18328718","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21397187","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3BSB","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI12 |
| Number of Residues | 4 |
| Details | Region: {"description":"Uracil-nucleotide binding in RNA target","evidences":[{"source":"PubMed","id":"18328718","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21397187","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1M8W","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1M8X","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3BSB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3BSX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3Q0L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3Q0M","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3Q0N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3Q0O","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3Q0P","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
