Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5YJJ

Crystal structure of PNPase from Staphylococcus epidermidis

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000287	molecular_function	magnesium ion binding
A	0003676	molecular_function	nucleic acid binding
A	0003723	molecular_function	RNA binding
A	0004654	molecular_function	polyribonucleotide nucleotidyltransferase activity
A	0005737	cellular_component	cytoplasm
A	0006396	biological_process	RNA processing
A	0006402	biological_process	mRNA catabolic process
A	0016779	molecular_function	nucleotidyltransferase activity
A	0046872	molecular_function	metal ion binding
B	0000287	molecular_function	magnesium ion binding
B	0003676	molecular_function	nucleic acid binding
B	0003723	molecular_function	RNA binding
B	0004654	molecular_function	polyribonucleotide nucleotidyltransferase activity
B	0005737	cellular_component	cytoplasm
B	0006396	biological_process	RNA processing
B	0006402	biological_process	mRNA catabolic process
B	0016779	molecular_function	nucleotidyltransferase activity
B	0046872	molecular_function	metal ion binding
C	0000287	molecular_function	magnesium ion binding
C	0003676	molecular_function	nucleic acid binding
C	0003723	molecular_function	RNA binding
C	0004654	molecular_function	polyribonucleotide nucleotidyltransferase activity
C	0005737	cellular_component	cytoplasm
C	0006396	biological_process	RNA processing
C	0006402	biological_process	mRNA catabolic process
C	0016779	molecular_function	nucleotidyltransferase activity
C	0046872	molecular_function	metal ion binding
D	0000287	molecular_function	magnesium ion binding
D	0003676	molecular_function	nucleic acid binding
D	0003723	molecular_function	RNA binding
D	0004654	molecular_function	polyribonucleotide nucleotidyltransferase activity
D	0005737	cellular_component	cytoplasm
D	0006396	biological_process	RNA processing
D	0006402	biological_process	mRNA catabolic process
D	0016779	molecular_function	nucleotidyltransferase activity
D	0046872	molecular_function	metal ion binding
E	0000287	molecular_function	magnesium ion binding
E	0003676	molecular_function	nucleic acid binding
E	0003723	molecular_function	RNA binding
E	0004654	molecular_function	polyribonucleotide nucleotidyltransferase activity
E	0005737	cellular_component	cytoplasm
E	0006396	biological_process	RNA processing
E	0006402	biological_process	mRNA catabolic process
E	0016779	molecular_function	nucleotidyltransferase activity
E	0046872	molecular_function	metal ion binding
F	0000287	molecular_function	magnesium ion binding
F	0003676	molecular_function	nucleic acid binding
F	0003723	molecular_function	RNA binding
F	0004654	molecular_function	polyribonucleotide nucleotidyltransferase activity
F	0005737	cellular_component	cytoplasm
F	0006396	biological_process	RNA processing
F	0006402	biological_process	mRNA catabolic process
F	0016779	molecular_function	nucleotidyltransferase activity
F	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	8
Details	binding site for residue PO4 A 801

Chain	Residue
A	ARG403
A	HIS407
A	SER441
A	SER442
A	SER443
A	LYS498
A	MG802
A	HOH1040

site_id	AC2
Number of Residues	4
Details	binding site for residue MG A 802

Chain	Residue
A	ALA469
A	ASP496
A	PO4801
A	SER441

site_id	AC3
Number of Residues	12
Details	binding site for residue PO4 B 801

Chain	Residue
B	ARG403
B	HIS407
B	SER441
B	SER442
B	SER443
B	ASP496
B	LYS498
B	MG802
B	HOH939
B	HOH941
B	HOH943
B	HOH969

site_id	AC4
Number of Residues	5
Details	binding site for residue MG B 802

Chain	Residue
B	SER441
B	ALA469
B	ILE485
B	ASP496
B	PO4801

site_id	AC5
Number of Residues	10
Details	binding site for residue PO4 C 801

Chain	Residue
C	ARG403
C	HIS407
C	SER441
C	SER442
C	SER443
C	LYS498
C	MG802
C	HOH932
C	HOH934
C	HOH953

site_id	AC6
Number of Residues	6
Details	binding site for residue MG C 802

Chain	Residue
C	SER441
C	ALA469
C	ILE485
C	ASP496
C	PO4801
C	HOH1098

site_id	AC7
Number of Residues	8
Details	binding site for residue PO4 D 801

Chain	Residue
D	ARG403
D	HIS407
D	SER441
D	SER442
D	SER443
D	LYS498
D	MG802
D	HOH932

site_id	AC8
Number of Residues	2
Details	binding site for residue MG D 802

Chain	Residue
D	ASP490
D	PO4801

site_id	AC9
Number of Residues	8
Details	binding site for residue PO4 E 801

Chain	Residue
E	ARG403
E	HIS407
E	SER441
E	SER442
E	SER443
E	LYS498
E	MG802
E	HOH933

site_id	AD1
Number of Residues	4
Details	binding site for residue MG E 802

Chain	Residue
E	SER441
E	ALA469
E	ASP496
E	PO4801

site_id	AD2
Number of Residues	10
Details	binding site for residue PO4 F 801

Chain	Residue
F	ARG403
F	HIS407
F	GLY440
F	SER441
F	SER442
F	SER443
F	LYS498
F	MG802
F	HOH933
F	HOH943

site_id	AD3
Number of Residues	6
Details	binding site for residue MG F 802

Chain	Residue
F	SER441
F	ALA469
F	ASP496
F	PO4801
F	HOH926
F	HOH1088

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	12
Details	BINDING: BINDING => ECO:0000255\|HAMAP-Rule:MF_01595

Chain	Residue	Details
A	ASP490
E	ASP496
F	ASP490
F	ASP496
A	ASP496
B	ASP490
B	ASP496
C	ASP490
C	ASP496
D	ASP490
D	ASP496
E	ASP490

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)