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5YIW

Caulobacter crescentus GcrA DNA-binding domain (DBD) in complex with methylated dsDNA (crystal form 2)

Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue BU3 D 1000
ChainResidue
BASN34
DDG10
DDC11
DHOH1102
DHOH1110
EDG-9

site_idAC2
Number of Residues22
Detailsbinding site for Di-nucleotide DG D 5 and 6MA D 6
ChainResidue
AARG33
AASN34
AILE37
AHIS41
CALA25
CLYS26
CGLY30
CVAL31
CTHR32
CARG33
DDT4
DDT7
DHOH1106
DHOH1107
DHOH1115
EDA-7
EDT-6
EDC-5
EDA-4
ATRP15
ASER20
AALA21

site_idAC3
Number of Residues16
Detailsbinding site for Di-nucleotide 6MA D 6 and DT D 7
ChainResidue
AASN34
AILE37
AHIS41
CTHR32
CARG33
DDG5
DDT8
DHOH1107
DHOH1109
DHOH1114
DHOH1115
EDA-7
EDC-5
E6MA-8
EDT-6
EHOH106

site_idAC4
Number of Residues17
Detailsbinding site for Di-nucleotide 6MA E -8 and DA E -7
ChainResidue
ATHR32
AASN34
BARG33
BILE37
BHOH101
D6MA6
DDT7
DDT8
DHOH1102
EDG-9
EDT-6
EHOH104
EHOH111
EHOH113
EHOH114
EHOH115
EHOH116

site_idAC5
Number of Residues20
Detailsbinding site for Di-nucleotide DG E -9 and 6MA E -8
ChainResidue
ATRP3
ATHR32
AASN34
AALA35
AARG42
AHOH101
AHOH105
DDT7
DDT8
DDC9
DDG10
DBU31000
DHOH1102
EDA-7
EDC-10
EHOH107
EHOH109
EHOH111
EHOH113
EHOH115

223532

PDB entries from 2024-08-07

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