5YF9
Crystal structure of CK2a2 form-2
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| B | 0000785 | cellular_component | chromatin |
| B | 0001669 | cellular_component | acrosomal vesicle |
| B | 0004672 | molecular_function | protein kinase activity |
| B | 0004674 | molecular_function | protein serine/threonine kinase activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005634 | cellular_component | nucleus |
| B | 0005654 | cellular_component | nucleoplasm |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0005956 | cellular_component | protein kinase CK2 complex |
| B | 0006302 | biological_process | double-strand break repair |
| B | 0006468 | biological_process | protein phosphorylation |
| B | 0006915 | biological_process | apoptotic process |
| B | 0007283 | biological_process | spermatogenesis |
| B | 0016055 | biological_process | Wnt signaling pathway |
| B | 0021987 | biological_process | cerebral cortex development |
| B | 0031519 | cellular_component | PcG protein complex |
| B | 0032435 | biological_process | negative regulation of proteasomal ubiquitin-dependent protein catabolic process |
| B | 0051726 | biological_process | regulation of cell cycle |
| B | 0097421 | biological_process | liver regeneration |
| B | 0106310 | molecular_function | protein serine kinase activity |
| B | 1901524 | biological_process | regulation of mitophagy |
| B | 1903955 | biological_process | positive regulation of protein targeting to mitochondrion |
| B | 1905818 | biological_process | regulation of chromosome separation |
| B | 2001234 | biological_process | negative regulation of apoptotic signaling pathway |
| X | 0000785 | cellular_component | chromatin |
| X | 0001669 | cellular_component | acrosomal vesicle |
| X | 0004672 | molecular_function | protein kinase activity |
| X | 0004674 | molecular_function | protein serine/threonine kinase activity |
| X | 0005515 | molecular_function | protein binding |
| X | 0005524 | molecular_function | ATP binding |
| X | 0005634 | cellular_component | nucleus |
| X | 0005654 | cellular_component | nucleoplasm |
| X | 0005737 | cellular_component | cytoplasm |
| X | 0005829 | cellular_component | cytosol |
| X | 0005956 | cellular_component | protein kinase CK2 complex |
| X | 0006302 | biological_process | double-strand break repair |
| X | 0006468 | biological_process | protein phosphorylation |
| X | 0006915 | biological_process | apoptotic process |
| X | 0007283 | biological_process | spermatogenesis |
| X | 0016055 | biological_process | Wnt signaling pathway |
| X | 0021987 | biological_process | cerebral cortex development |
| X | 0031519 | cellular_component | PcG protein complex |
| X | 0032435 | biological_process | negative regulation of proteasomal ubiquitin-dependent protein catabolic process |
| X | 0051726 | biological_process | regulation of cell cycle |
| X | 0097421 | biological_process | liver regeneration |
| X | 0106310 | molecular_function | protein serine kinase activity |
| X | 1901524 | biological_process | regulation of mitophagy |
| X | 1903955 | biological_process | positive regulation of protein targeting to mitochondrion |
| X | 1905818 | biological_process | regulation of chromosome separation |
| X | 2001234 | biological_process | negative regulation of apoptotic signaling pathway |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 8 |
| Details | binding site for residue NIO X 401 |
| Chain | Residue |
| X | VAL67 |
| X | LYS69 |
| X | PHE114 |
| X | ILE175 |
| X | ASP176 |
| X | HOH585 |
| X | HOH610 |
| X | HOH621 |
| site_id | AC2 |
| Number of Residues | 8 |
| Details | binding site for residue SO4 X 402 |
| Chain | Residue |
| X | ARG81 |
| X | ARG156 |
| X | ASN190 |
| X | HOH508 |
| X | HOH561 |
| X | HOH712 |
| X | HOH737 |
| X | LYS78 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | binding site for residue SO4 X 403 |
| Chain | Residue |
| X | ARG307 |
| X | TYR308 |
| X | ASP309 |
| X | HOH560 |
| X | HOH572 |
| X | HOH591 |
| X | HOH626 |
| X | HOH769 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 X 404 |
| Chain | Residue |
| X | LYS171 |
| X | ARG173 |
| X | HOH657 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 X 405 |
| Chain | Residue |
| X | HIS287 |
| X | SER288 |
| X | ARG291 |
| X | HOH725 |
| X | HOH763 |
| site_id | AC6 |
| Number of Residues | 9 |
| Details | binding site for residue SO4 X 406 |
| Chain | Residue |
| B | ARG192 |
| B | HOH721 |
| X | LYS199 |
| X | ASN239 |
| X | HOH507 |
| X | HOH511 |
| X | HOH535 |
| X | HOH612 |
| X | HOH617 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | binding site for residue NIO B 401 |
| Chain | Residue |
| B | LYS69 |
| B | PHE114 |
| B | ILE175 |
| B | ASP176 |
| B | HOH549 |
| site_id | AC8 |
| Number of Residues | 8 |
| Details | binding site for residue SO4 B 402 |
| Chain | Residue |
| B | LYS78 |
| B | ARG81 |
| B | ARG156 |
| B | ASN190 |
| B | HOH516 |
| B | HOH521 |
| B | HOH553 |
| B | HOH587 |
| site_id | AC9 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 B 403 |
| Chain | Residue |
| B | ARG307 |
| B | ASP309 |
| B | HOH531 |
| B | HOH564 |
| B | HOH664 |
| B | HOH724 |
| B | HOH744 |
| site_id | AD1 |
| Number of Residues | 8 |
| Details | binding site for residue SO4 B 404 |
| Chain | Residue |
| B | ARG192 |
| B | LYS199 |
| B | ASN239 |
| B | HOH608 |
| B | HOH771 |
| B | HOH786 |
| X | ARG192 |
| X | HOH507 |
Functional Information from PROSITE/UniProt
| site_id | PS00107 |
| Number of Residues | 24 |
| Details | PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGRGKYSEVFeAinitnner..........VVVK |
| Chain | Residue | Details |
| X | LEU46-LYS69 |
| site_id | PS00108 |
| Number of Residues | 13 |
| Details | PROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. ImHrDVKphNVMI |
| Chain | Residue | Details |
| X | ILE153-ILE165 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | ACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000255|PROSITE-ProRule:PRU10027 |
| Chain | Residue | Details |
| X | ASP157 | |
| B | ASP157 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00159 |
| Chain | Residue | Details |
| X | LEU46 | |
| X | LYS69 | |
| B | LEU46 | |
| B | LYS69 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphotyrosine => ECO:0007744|PubMed:19369195 |
| Chain | Residue | Details |
| X | TYR13 | |
| B | TYR13 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:18691976, ECO:0007744|PubMed:19369195, ECO:0007744|PubMed:23186163 |
| Chain | Residue | Details |
| X | SER18 | |
| B | SER18 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:18691976, ECO:0007744|PubMed:19369195 |
| Chain | Residue | Details |
| X | SER21 | |
| X | SER288 | |
| B | SER21 | |
| B | SER288 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861 |
| Chain | Residue | Details |
| X | LYS97 | |
| B | LYS97 |
