Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5YEC

Crystal structure of Atg7CTD-Atg8-MgATP complex in form II

Functional Information from GO Data
ChainGOidnamespacecontents
A0008641molecular_functionubiquitin-like modifier activating enzyme activity
B0000045biological_processautophagosome assembly
B0000329cellular_componentfungal-type vacuole membrane
B0000407cellular_componentphagophore assembly site
B0000421cellular_componentautophagosome membrane
B0000422biological_processautophagy of mitochondrion
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0005773cellular_componentvacuole
B0005776cellular_componentautophagosome
B0005811cellular_componentlipid droplet
B0005829cellular_componentcytosol
B0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
B0006914biological_processautophagy
B0006995biological_processcellular response to nitrogen starvation
B0008429molecular_functionphosphatidylethanolamine binding
B0015031biological_processprotein transport
B0016020cellular_componentmembrane
B0016241biological_processregulation of macroautophagy
B0031386molecular_functionprotein tag activity
B0031410cellular_componentcytoplasmic vesicle
B0031503biological_processprotein-containing complex localization
B0031966cellular_componentmitochondrial membrane
B0032258biological_processcytoplasm to vacuole targeting by the Cvt pathway
B0033110cellular_componentCvt vesicle membrane
B0034497biological_processprotein localization to phagophore assembly site
B0034727biological_processpiecemeal microautophagy of the nucleus
B0044804biological_processnucleophagy
B0061025biological_processmembrane fusion
B0061709biological_processreticulophagy
B0071211biological_processprotein targeting to vacuole involved in autophagy
B0097352biological_processautophagosome maturation
B0120095cellular_componentvacuole-isolation membrane contact site
B0140042biological_processlipid droplet formation
B1905153biological_processregulation of membrane invagination
C0008641molecular_functionubiquitin-like modifier activating enzyme activity
D0000045biological_processautophagosome assembly
D0000329cellular_componentfungal-type vacuole membrane
D0000407cellular_componentphagophore assembly site
D0000421cellular_componentautophagosome membrane
D0000422biological_processautophagy of mitochondrion
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0005739cellular_componentmitochondrion
D0005773cellular_componentvacuole
D0005776cellular_componentautophagosome
D0005811cellular_componentlipid droplet
D0005829cellular_componentcytosol
D0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
D0006914biological_processautophagy
D0006995biological_processcellular response to nitrogen starvation
D0008429molecular_functionphosphatidylethanolamine binding
D0015031biological_processprotein transport
D0016020cellular_componentmembrane
D0016241biological_processregulation of macroautophagy
D0031386molecular_functionprotein tag activity
D0031410cellular_componentcytoplasmic vesicle
D0031503biological_processprotein-containing complex localization
D0031966cellular_componentmitochondrial membrane
D0032258biological_processcytoplasm to vacuole targeting by the Cvt pathway
D0033110cellular_componentCvt vesicle membrane
D0034497biological_processprotein localization to phagophore assembly site
D0034727biological_processpiecemeal microautophagy of the nucleus
D0044804biological_processnucleophagy
D0061025biological_processmembrane fusion
D0061709biological_processreticulophagy
D0071211biological_processprotein targeting to vacuole involved in autophagy
D0097352biological_processautophagosome maturation
D0120095cellular_componentvacuole-isolation membrane contact site
D0140042biological_processlipid droplet formation
D1905153biological_processregulation of membrane invagination
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 701
ChainResidue
ACYS485
ACYS488
ACYS569
ACYS572

site_idAC2
Number of Residues15
Detailsbinding site for residue ATP A 702
ChainResidue
AGLY357
AGLN367
ALYS379
ALEU401
ASER402
AILE403
AASP438
ASER442
AMG703
AHOH811
AGLY331
AGLY333
ATHR334
AASP355
AASN356

site_idAC3
Number of Residues2
Detailsbinding site for residue MG A 703
ChainResidue
AASP438
AATP702

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN C 701
ChainResidue
CCYS485
CCYS488
CCYS569
CCYS572

site_idAC5
Number of Residues18
Detailsbinding site for residue ATP C 702
ChainResidue
CGLY333
CTHR334
CASP355
CASN356
CASN363
CGLN367
CLYS379
CLEU401
CILE403
CMET405
CASP438
CSER442
CMG703
CHOH813
CHOH821
CHOH826
CHOH840
CHOH843

site_idAC6
Number of Residues2
Detailsbinding site for residue MG C 703
ChainResidue
CASP438
CATP702

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Cleavage; by ATG4 => ECO:0000269|PubMed:11038174
ChainResidueDetails
BGLY116
DGLY116

site_idSWS_FT_FI2
Number of Residues2
DetailsLIPID: Phosphatidylethanolamine amidated glycine => ECO:0000269|PubMed:11100732
ChainResidueDetails
BGLY116
DGLY116

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon