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5YD3

Crystal structure of the scFv antibody 4B08 with epitope peptide

Functional Information from GO Data
ChainGOidnamespacecontents
A0002250biological_processadaptive immune response
A0003823molecular_functionantigen binding
A0005615cellular_componentextracellular space
A0006955biological_processimmune response
A0019814cellular_componentimmunoglobulin complex
C0002250biological_processadaptive immune response
C0003823molecular_functionantigen binding
C0005615cellular_componentextracellular space
C0006955biological_processimmune response
C0019814cellular_componentimmunoglobulin complex
E0002250biological_processadaptive immune response
E0003823molecular_functionantigen binding
E0005615cellular_componentextracellular space
E0006955biological_processimmune response
E0019814cellular_componentimmunoglobulin complex
G0002250biological_processadaptive immune response
G0003823molecular_functionantigen binding
G0005615cellular_componentextracellular space
G0006955biological_processimmune response
G0019814cellular_componentimmunoglobulin complex
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue SO4 A 301
ChainResidue
AARG219
ASER221
AARG222
AHOH430

site_idAC2
Number of Residues4
Detailsbinding site for residue SO4 A 302
ChainResidue
ASER23
ATYR82
AHOH428
CLYS167

site_idAC3
Number of Residues4
Detailsbinding site for residue SO4 A 303
ChainResidue
ATHR30
ALYS33
ATYR34
ATYR29

site_idAC4
Number of Residues2
Detailsbinding site for residue SO4 A 304
ChainResidue
ALYS252
GTYR102

site_idAC5
Number of Residues6
Detailsbinding site for residue GOL A 305
ChainResidue
ATYR62
APHE66
ALYS67
AGLY68
AALA70
ATHR71

site_idAC6
Number of Residues4
Detailsbinding site for residue SO4 C 301
ChainResidue
CTYR29
CTHR30
CLYS33
CTYR34

site_idAC7
Number of Residues9
Detailsbinding site for residue SO4 E 301
ChainResidue
AARG164
AHOH490
CGLY10
CALA11
CHOH483
EGLU157
ESER158
EHOH402
EHOH513

site_idAC8
Number of Residues6
Detailsbinding site for residue SO4 E 302
ChainResidue
EARG42
EHIS45
EHOH405
GTHR30
GLYS33
GTYR34

site_idAC9
Number of Residues5
Detailsbinding site for residue SO4 E 303
ChainResidue
ETYR29
ETHR30
ELYS33
ETYR34
EHOH475

site_idAD1
Number of Residues6
Detailsbinding site for residue SO4 E 304
ChainResidue
EHIS171
EARG172
EHOH424
EHOH509
EHOH526
EHOH578

site_idAD2
Number of Residues6
Detailsbinding site for residue SO4 G 301
ChainResidue
CSER162
CARG164
GVAL159
GSER160
GHOH411
GHOH429

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsMOD_RES: Sulfotyrosine => ECO:0000269|PubMed:21763489
ChainResidueDetails
BTYR4
DTYR4
FTYR4
HTYR4

site_idSWS_FT_FI2
Number of Residues4
DetailsMOD_RES: Sulfotyrosine => ECO:0000255
ChainResidueDetails
BTYR5
DTYR5
FTYR5
HTYR5

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PDB entries from 2024-09-11

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