5YD3

Crystal structure of the scFv antibody 4B08 with epitope peptide

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0002250	biological_process	adaptive immune response
A	0002376	biological_process	immune system process
A	0003823	molecular_function	antigen binding
A	0005576	cellular_component	extracellular region
A	0005886	cellular_component	plasma membrane
A	0006955	biological_process	immune response
A	0019814	cellular_component	immunoglobulin complex
C	0002250	biological_process	adaptive immune response
C	0002376	biological_process	immune system process
C	0003823	molecular_function	antigen binding
C	0005576	cellular_component	extracellular region
C	0005886	cellular_component	plasma membrane
C	0006955	biological_process	immune response
C	0019814	cellular_component	immunoglobulin complex
E	0002250	biological_process	adaptive immune response
E	0002376	biological_process	immune system process
E	0003823	molecular_function	antigen binding
E	0005576	cellular_component	extracellular region
E	0005886	cellular_component	plasma membrane
E	0006955	biological_process	immune response
E	0019814	cellular_component	immunoglobulin complex
G	0002250	biological_process	adaptive immune response
G	0002376	biological_process	immune system process
G	0003823	molecular_function	antigen binding
G	0005576	cellular_component	extracellular region
G	0005886	cellular_component	plasma membrane
G	0006955	biological_process	immune response
G	0019814	cellular_component	immunoglobulin complex

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue SO4 A 301

Chain	Residue
A	ARG219
A	SER221
A	ARG222
A	HOH430

---

site_id	AC2
Number of Residues	4
Details	binding site for residue SO4 A 302

Chain	Residue
A	SER23
A	TYR82
A	HOH428
C	LYS167

---

site_id	AC3
Number of Residues	4
Details	binding site for residue SO4 A 303

Chain	Residue
A	THR30
A	LYS33
A	TYR34
A	TYR29

---

site_id	AC4
Number of Residues	2
Details	binding site for residue SO4 A 304

Chain	Residue
A	LYS252
G	TYR102

---

site_id	AC5
Number of Residues	6
Details	binding site for residue GOL A 305

Chain	Residue
A	TYR62
A	PHE66
A	LYS67
A	GLY68
A	ALA70
A	THR71

---

site_id	AC6
Number of Residues	4
Details	binding site for residue SO4 C 301

Chain	Residue
C	TYR29
C	THR30
C	LYS33
C	TYR34

---

site_id	AC7
Number of Residues	9
Details	binding site for residue SO4 E 301

Chain	Residue
A	ARG164
A	HOH490
C	GLY10
C	ALA11
C	HOH483
E	GLU157
E	SER158
E	HOH402
E	HOH513

---

site_id	AC8
Number of Residues	6
Details	binding site for residue SO4 E 302

Chain	Residue
E	ARG42
E	HIS45
E	HOH405
G	THR30
G	LYS33
G	TYR34

---

site_id	AC9
Number of Residues	5
Details	binding site for residue SO4 E 303

Chain	Residue
E	TYR29
E	THR30
E	LYS33
E	TYR34
E	HOH475

---

site_id	AD1
Number of Residues	6
Details	binding site for residue SO4 E 304

Chain	Residue
E	HIS171
E	ARG172
E	HOH424
E	HOH509
E	HOH526
E	HOH578

---

site_id	AD2
Number of Residues	6
Details	binding site for residue SO4 G 301

Chain	Residue
C	SER162
C	ARG164
G	VAL159
G	SER160
G	HOH411
G	HOH429

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	88
Details	Region: {"description":"Framework-1"}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	60
Details	Region: {"description":"Complementarity-determining-1"}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	56
Details	Region: {"description":"Framework-2"}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	24
Details	Region: {"description":"Complementarity-determining-2"}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	124
Details	Region: {"description":"Framework-3"}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	32
Details	Region: {"description":"Complementarity-determining-3"}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	27
Details	Region: {"description":"Framework-4"}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	4
Details	Modified residue: {"description":"Sulfotyrosine","evidences":[{"source":"PubMed","id":"21763489","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	4
Details	Modified residue: {"description":"Sulfotyrosine","evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---