5YCD
Crystal structure of Poecilia reticulata adenylate kinase
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004017 | molecular_function | AMP kinase activity |
| A | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006139 | biological_process | nucleobase-containing compound metabolic process |
| A | 0006172 | biological_process | ADP biosynthetic process |
| A | 0009142 | biological_process | nucleoside triphosphate biosynthetic process |
| A | 0019205 | molecular_function | nucleobase-containing compound kinase activity |
| A | 0046033 | biological_process | AMP metabolic process |
| A | 0046034 | biological_process | ATP metabolic process |
| A | 0047506 | molecular_function | dAMP kinase activity |
| A | 0050145 | molecular_function | nucleoside monophosphate kinase activity |
| B | 0004017 | molecular_function | AMP kinase activity |
| B | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006139 | biological_process | nucleobase-containing compound metabolic process |
| B | 0006172 | biological_process | ADP biosynthetic process |
| B | 0009142 | biological_process | nucleoside triphosphate biosynthetic process |
| B | 0019205 | molecular_function | nucleobase-containing compound kinase activity |
| B | 0046033 | biological_process | AMP metabolic process |
| B | 0046034 | biological_process | ATP metabolic process |
| B | 0047506 | molecular_function | dAMP kinase activity |
| B | 0050145 | molecular_function | nucleoside monophosphate kinase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 41 |
| Details | binding site for residue AP5 A 201 |
| Chain | Residue |
| A | GLY16 |
| A | GLY40 |
| A | LEU43 |
| A | ARG44 |
| A | MET61 |
| A | GLU65 |
| A | LEU66 |
| A | VAL67 |
| A | GLY94 |
| A | TYR95 |
| A | ARG97 |
| A | PRO17 |
| A | GLN101 |
| A | ARG128 |
| A | LEU129 |
| A | ARG132 |
| A | ARG138 |
| A | ARG149 |
| A | SER175 |
| A | LEU177 |
| A | VAL179 |
| A | MG202 |
| A | GLY18 |
| A | HOH301 |
| A | HOH303 |
| A | HOH307 |
| A | HOH316 |
| A | HOH321 |
| A | HOH325 |
| A | HOH332 |
| A | HOH337 |
| A | HOH357 |
| A | HOH359 |
| A | SER19 |
| A | HOH360 |
| A | HOH364 |
| A | GLY20 |
| A | LYS21 |
| A | GLY22 |
| A | THR23 |
| A | SER39 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue MG A 202 |
| Chain | Residue |
| A | AP5201 |
| A | HOH303 |
| A | HOH315 |
| A | HOH345 |
| A | HOH357 |
| site_id | AC3 |
| Number of Residues | 42 |
| Details | binding site for residue AP5 B 201 |
| Chain | Residue |
| A | ALA30 |
| B | PRO17 |
| B | GLY18 |
| B | SER19 |
| B | GLY20 |
| B | LYS21 |
| B | GLY22 |
| B | THR23 |
| B | SER39 |
| B | GLY40 |
| B | LEU43 |
| B | ARG44 |
| B | MET61 |
| B | GLU65 |
| B | VAL67 |
| B | GLY94 |
| B | TYR95 |
| B | ARG97 |
| B | GLN101 |
| B | ARG128 |
| B | LEU129 |
| B | ARG132 |
| B | ARG138 |
| B | ARG149 |
| B | SER175 |
| B | LEU177 |
| B | VAL179 |
| B | MG202 |
| B | HOH301 |
| B | HOH306 |
| B | HOH314 |
| B | HOH331 |
| B | HOH335 |
| B | HOH338 |
| B | HOH345 |
| B | HOH353 |
| B | HOH364 |
| B | HOH374 |
| B | HOH381 |
| B | HOH383 |
| B | HOH385 |
| B | HOH397 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue MG B 202 |
| Chain | Residue |
| B | AP5201 |
| B | HOH306 |
| B | HOH335 |
| B | HOH366 |
| B | HOH385 |
Functional Information from PROSITE/UniProt
| site_id | PS00113 |
| Number of Residues | 12 |
| Details | ADENYLATE_KINASE Adenylate kinase signature. FLIDGYPRevkQ |
| Chain | Residue | Details |
| A | PHE90-GLN101 |
