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5YC4

Crystal structure of AL3 PHD finger bound to H3K4me3

Functional Information from GO Data
ChainGOidnamespacecontents
A0006355biological_processregulation of DNA-templated transcription
A0042393molecular_functionhistone binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 101
ChainResidue
ACYS7
ACYS10
AHIS31
ACYS34

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 102
ChainResidue
ACYS23
ACYS26
ACYS50
ACYS53

site_idAC3
Number of Residues11
Detailsbinding site for Ligand residues M3L P 4 through GLN P 5 bound to THR P 3
ChainResidue
AGLU18
APHE19
ATRP20
ATRP29
PALA1
PARG2
PTHR3
PTHR3
PTHR6
PHOH101
AASP17

Functional Information from PROSITE/UniProt
site_idPS01359
Number of Residues47
DetailsZF_PHD_1 Zinc finger PHD-type signature. CgaCgdsdgadefw...................................IcCdl..Cekw.FHgkCvkitparaehikq................................YkCpsC
ChainResidueDetails
ACYS7-CYS53

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsSite: {"description":"Histone H3K4me3 binding","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

245663

PDB entries from 2025-12-03

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