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5Y9X

Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with alphaketoglutarate and coblat(II)

Functional Information from GO Data
ChainGOidnamespacecontents
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue CO A 401
ChainResidue
AHIS146
AASP148
AHIS260
AAKG402
AHOH650

site_idAC2
Number of Residues13
Detailsbinding site for residue AKG A 402
ChainResidue
AARG162
APHE164
AARG174
ATRP176
AHIS260
AVAL262
ACO401
AHOH623
AHOH650
AARG127
AASP142
AHIS146
AASP148

site_idAC3
Number of Residues8
Detailsbinding site for residue PG4 A 403
ChainResidue
AGLU22
ALEU57
ALYS58
AGLU102
ALYS103
AHOH507
AHOH517
AHOH580

site_idAC4
Number of Residues4
Detailsbinding site for residue PG4 A 404
ChainResidue
ATYR205
AHOH594
AHOH607
AHOH638

site_idAC5
Number of Residues11
Detailsbinding site for residue PG4 A 405
ChainResidue
AARG201
ATYR213
ASER215
ALEU216
ALEU299
ASER301
ASER302
AACT414
AHOH520
AHOH624
AHOH726

site_idAC6
Number of Residues5
Detailsbinding site for residue PG4 A 406
ChainResidue
AARG177
AGLN235
AGLN240
AASP263
AASN296

site_idAC7
Number of Residues4
Detailsbinding site for residue SO4 A 407
ChainResidue
ASER118
ALYS120
ALYS276
AHOH516

site_idAC8
Number of Residues7
Detailsbinding site for residue SO4 A 408
ChainResidue
APRO12
ALEU193
ASER194
APRO195
ATYR220
ALEU295
AHOH508

site_idAC9
Number of Residues3
Detailsbinding site for residue SO4 A 409
ChainResidue
AARG76
AHIS274
AACT411

site_idAD1
Number of Residues5
Detailsbinding site for residue ACT A 410
ChainResidue
ALYS140
APHE150
APRO151
ASER152
AHOH532

site_idAD2
Number of Residues5
Detailsbinding site for residue ACT A 411
ChainResidue
APHE150
ASER153
AHIS274
ASO4409
AHOH504

site_idAD3
Number of Residues5
Detailsbinding site for residue ACT A 412
ChainResidue
ALYS81
ALYS276
AASN278
ASER304
AHOH631

site_idAD4
Number of Residues1
Detailsbinding site for residue ACT A 413
ChainResidue
AHOH503

site_idAD5
Number of Residues6
Detailsbinding site for residue ACT A 414
ChainResidue
APRO198
AGLY199
AARG201
APG4405
ACL418
AHOH640

site_idAD6
Number of Residues1
Detailsbinding site for residue ACT A 415
ChainResidue
AARG214

site_idAD7
Number of Residues7
Detailsbinding site for residue GOL A 416
ChainResidue
AILE131
ALYS140
AASP142
AVAL262
AHOH542
AHOH623
AHOH626

site_idAD8
Number of Residues6
Detailsbinding site for residue CL A 417
ChainResidue
APHE16
AASP17
AILE29
ALYS32
AHOH715
AHOH751

site_idAD9
Number of Residues4
Detailsbinding site for residue CL A 418
ChainResidue
AACT414
AGLY199
APHE202
ATYR213

site_idAE1
Number of Residues2
Detailsbinding site for residue CL A 419
ChainResidue
ALYS86
ASER87

223790

PDB entries from 2024-08-14

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