5Y9M
Crystal structure of CK2a2 form 3
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0000785 | cellular_component | chromatin |
| A | 0001669 | cellular_component | acrosomal vesicle |
| A | 0004672 | molecular_function | protein kinase activity |
| A | 0004674 | molecular_function | protein serine/threonine kinase activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005654 | cellular_component | nucleoplasm |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0005956 | cellular_component | protein kinase CK2 complex |
| A | 0006302 | biological_process | double-strand break repair |
| A | 0006468 | biological_process | protein phosphorylation |
| A | 0006915 | biological_process | apoptotic process |
| A | 0006974 | biological_process | DNA damage response |
| A | 0007283 | biological_process | spermatogenesis |
| A | 0016055 | biological_process | Wnt signaling pathway |
| A | 0016301 | molecular_function | kinase activity |
| A | 0016740 | molecular_function | transferase activity |
| A | 0021987 | biological_process | cerebral cortex development |
| A | 0031519 | cellular_component | PcG protein complex |
| A | 0032435 | biological_process | negative regulation of proteasomal ubiquitin-dependent protein catabolic process |
| A | 0042176 | biological_process | regulation of protein catabolic process |
| A | 0051726 | biological_process | regulation of cell cycle |
| A | 0097421 | biological_process | liver regeneration |
| A | 0106310 | molecular_function | protein serine kinase activity |
| A | 1901524 | biological_process | regulation of mitophagy |
| A | 1903955 | biological_process | positive regulation of protein targeting to mitochondrion |
| A | 1905818 | biological_process | regulation of chromosome separation |
| A | 2001234 | biological_process | negative regulation of apoptotic signaling pathway |
| X | 0000166 | molecular_function | nucleotide binding |
| X | 0000785 | cellular_component | chromatin |
| X | 0001669 | cellular_component | acrosomal vesicle |
| X | 0004672 | molecular_function | protein kinase activity |
| X | 0004674 | molecular_function | protein serine/threonine kinase activity |
| X | 0005515 | molecular_function | protein binding |
| X | 0005524 | molecular_function | ATP binding |
| X | 0005634 | cellular_component | nucleus |
| X | 0005654 | cellular_component | nucleoplasm |
| X | 0005737 | cellular_component | cytoplasm |
| X | 0005829 | cellular_component | cytosol |
| X | 0005956 | cellular_component | protein kinase CK2 complex |
| X | 0006302 | biological_process | double-strand break repair |
| X | 0006468 | biological_process | protein phosphorylation |
| X | 0006915 | biological_process | apoptotic process |
| X | 0006974 | biological_process | DNA damage response |
| X | 0007283 | biological_process | spermatogenesis |
| X | 0016055 | biological_process | Wnt signaling pathway |
| X | 0016301 | molecular_function | kinase activity |
| X | 0016740 | molecular_function | transferase activity |
| X | 0021987 | biological_process | cerebral cortex development |
| X | 0031519 | cellular_component | PcG protein complex |
| X | 0032435 | biological_process | negative regulation of proteasomal ubiquitin-dependent protein catabolic process |
| X | 0042176 | biological_process | regulation of protein catabolic process |
| X | 0051726 | biological_process | regulation of cell cycle |
| X | 0097421 | biological_process | liver regeneration |
| X | 0106310 | molecular_function | protein serine kinase activity |
| X | 1901524 | biological_process | regulation of mitophagy |
| X | 1903955 | biological_process | positive regulation of protein targeting to mitochondrion |
| X | 1905818 | biological_process | regulation of chromosome separation |
| X | 2001234 | biological_process | negative regulation of apoptotic signaling pathway |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 7 |
| Details | binding site for residue NIO X 401 |
| Chain | Residue |
| X | VAL67 |
| X | LYS69 |
| X | PHE114 |
| X | ILE175 |
| X | ASP176 |
| X | HOH562 |
| X | HOH575 |
| site_id | AC2 |
| Number of Residues | 10 |
| Details | binding site for residue SO4 X 402 |
| Chain | Residue |
| X | ARG192 |
| X | HOH543 |
| X | HOH640 |
| X | HOH667 |
| X | HOH707 |
| X | HOH747 |
| X | HOH762 |
| X | HOH773 |
| A | LYS199 |
| A | ASN239 |
| site_id | AC3 |
| Number of Residues | 9 |
| Details | binding site for residue SO4 X 403 |
| Chain | Residue |
| X | ARG307 |
| X | TYR308 |
| X | ASP309 |
| X | HOH609 |
| X | HOH624 |
| X | HOH678 |
| X | HOH703 |
| X | HOH732 |
| X | HOH790 |
| site_id | AC4 |
| Number of Residues | 8 |
| Details | binding site for residue SO4 X 404 |
| Chain | Residue |
| X | LYS78 |
| X | ARG81 |
| X | ARG156 |
| X | ASN190 |
| X | HOH524 |
| X | HOH651 |
| X | HOH771 |
| X | HOH776 |
| site_id | AC5 |
| Number of Residues | 7 |
| Details | binding site for residue NIO A 401 |
| Chain | Residue |
| A | VAL67 |
| A | LYS69 |
| A | PHE114 |
| A | ILE175 |
| A | ASP176 |
| A | HOH549 |
| A | HOH628 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 A 402 |
| Chain | Residue |
| A | LYS78 |
| A | ARG81 |
| A | ARG156 |
| A | ASN190 |
| A | HOH516 |
| A | HOH610 |
| A | HOH698 |
Functional Information from PROSITE/UniProt
| site_id | PS00107 |
| Number of Residues | 24 |
| Details | PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGRGKYSEVFeAinitnner..........VVVK |
| Chain | Residue | Details |
| X | LEU46-LYS69 |
| site_id | PS00108 |
| Number of Residues | 13 |
| Details | PROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. ImHrDVKphNVMI |
| Chain | Residue | Details |
| X | ILE153-ILE165 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | Active site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10027","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"19369195","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18691976","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"19369195","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 4 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18691976","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"19369195","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
