5Y5P
Crystal structure of the dUTPase of white spot syndrome virus in complex with dU,PPi and Mg2+
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0004170 | molecular_function | dUTP diphosphatase activity |
| A | 0006226 | biological_process | dUMP biosynthetic process |
| A | 0046081 | biological_process | dUTP catabolic process |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0004170 | molecular_function | dUTP diphosphatase activity |
| B | 0006226 | biological_process | dUMP biosynthetic process |
| B | 0046081 | biological_process | dUTP catabolic process |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0004170 | molecular_function | dUTP diphosphatase activity |
| C | 0006226 | biological_process | dUMP biosynthetic process |
| C | 0046081 | biological_process | dUTP catabolic process |
| D | 0000287 | molecular_function | magnesium ion binding |
| D | 0004170 | molecular_function | dUTP diphosphatase activity |
| D | 0006226 | biological_process | dUMP biosynthetic process |
| D | 0046081 | biological_process | dUTP catabolic process |
| E | 0000287 | molecular_function | magnesium ion binding |
| E | 0004170 | molecular_function | dUTP diphosphatase activity |
| E | 0006226 | biological_process | dUMP biosynthetic process |
| E | 0046081 | biological_process | dUTP catabolic process |
| F | 0000287 | molecular_function | magnesium ion binding |
| F | 0004170 | molecular_function | dUTP diphosphatase activity |
| F | 0006226 | biological_process | dUMP biosynthetic process |
| F | 0046081 | biological_process | dUTP catabolic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 14 |
| Details | binding site for residue DUR A 501 |
| Chain | Residue |
| A | THR84 |
| A | PHE166 |
| A | POP502 |
| A | HOH620 |
| B | SER72 |
| B | HOH336 |
| A | GLY85 |
| A | THR86 |
| A | ILE87 |
| A | ASP88 |
| A | TYR91 |
| A | LYS96 |
| A | ARG161 |
| A | GLY165 |
| site_id | AC2 |
| Number of Residues | 16 |
| Details | binding site for residue POP A 502 |
| Chain | Residue |
| A | ARG161 |
| A | GLY165 |
| A | GLY167 |
| A | SER168 |
| A | THR169 |
| A | DUR501 |
| A | HOH614 |
| A | HOH664 |
| A | HOH677 |
| A | HOH688 |
| B | ARG71 |
| B | SER72 |
| B | GLY73 |
| B | MG201 |
| B | HOH310 |
| B | HOH336 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue POP A 503 |
| Chain | Residue |
| A | ARG71 |
| A | SER72 |
| A | GLY73 |
| C | DUR202 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue MG B 201 |
| Chain | Residue |
| A | POP502 |
| A | HOH664 |
| A | HOH677 |
| A | HOH688 |
| B | HOH310 |
| site_id | AC5 |
| Number of Residues | 12 |
| Details | binding site for residue DUR B 202 |
| Chain | Residue |
| B | THR84 |
| B | GLY85 |
| B | THR86 |
| B | ILE87 |
| B | ASP88 |
| B | TYR91 |
| B | LYS96 |
| B | GLY165 |
| B | PHE166 |
| B | POP203 |
| B | HOH304 |
| C | SER72 |
| site_id | AC6 |
| Number of Residues | 10 |
| Details | binding site for residue POP B 203 |
| Chain | Residue |
| B | ARG161 |
| B | GLY165 |
| B | GLY167 |
| B | SER168 |
| B | THR169 |
| B | DUR202 |
| C | ARG71 |
| C | SER72 |
| C | GLY73 |
| C | MG201 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | binding site for residue MG C 201 |
| Chain | Residue |
| B | POP203 |
| B | HOH319 |
| C | HOH350 |
| site_id | AC8 |
| Number of Residues | 10 |
| Details | binding site for residue DUR C 202 |
| Chain | Residue |
| A | SER72 |
| A | POP503 |
| C | THR84 |
| C | GLY85 |
| C | THR86 |
| C | ILE87 |
| C | ASP88 |
| C | TYR91 |
| C | LYS96 |
| C | HOH314 |
| site_id | AC9 |
| Number of Residues | 14 |
| Details | binding site for residue DUR D 501 |
| Chain | Residue |
| D | THR84 |
| D | GLY85 |
| D | THR86 |
| D | ILE87 |
| D | ASP88 |
| D | TYR91 |
| D | LYS96 |
| D | ARG161 |
| D | GLY165 |
| D | PHE166 |
| D | POP502 |
| D | HOH631 |
| E | SER72 |
| E | HOH332 |
| site_id | AD1 |
| Number of Residues | 16 |
| Details | binding site for residue POP D 502 |
| Chain | Residue |
| E | GLY73 |
| E | MG201 |
| E | HOH301 |
| E | HOH332 |
| E | HOH338 |
| D | ARG161 |
| D | GLY165 |
| D | GLY167 |
| D | SER168 |
| D | THR169 |
| D | DUR501 |
| D | HOH620 |
| D | HOH650 |
| D | HOH673 |
| E | ARG71 |
| E | SER72 |
| site_id | AD2 |
| Number of Residues | 5 |
| Details | binding site for residue MG D 503 |
| Chain | Residue |
| D | HOH607 |
| F | POP502 |
| F | HOH607 |
| F | HOH638 |
| F | HOH649 |
| site_id | AD3 |
| Number of Residues | 5 |
| Details | binding site for residue MG E 201 |
| Chain | Residue |
| D | POP502 |
| D | HOH650 |
| D | HOH673 |
| E | HOH301 |
| E | HOH338 |
| site_id | AD4 |
| Number of Residues | 9 |
| Details | binding site for residue DUR E 202 |
| Chain | Residue |
| E | THR84 |
| E | GLY85 |
| E | ILE87 |
| E | ASP88 |
| E | TYR91 |
| E | LEU95 |
| E | LYS96 |
| E | HOH310 |
| F | SER72 |
| site_id | AD5 |
| Number of Residues | 14 |
| Details | binding site for residue DUR F 501 |
| Chain | Residue |
| D | SER72 |
| D | HOH657 |
| F | THR84 |
| F | GLY85 |
| F | THR86 |
| F | ILE87 |
| F | ASP88 |
| F | TYR91 |
| F | LYS96 |
| F | ARG161 |
| F | GLY165 |
| F | PHE166 |
| F | POP502 |
| F | HOH608 |
| site_id | AD6 |
| Number of Residues | 13 |
| Details | binding site for residue POP F 502 |
| Chain | Residue |
| D | ARG71 |
| D | SER72 |
| D | GLY73 |
| D | MG503 |
| D | HOH607 |
| F | ARG161 |
| F | GLY165 |
| F | GLY167 |
| F | SER168 |
| F | THR169 |
| F | DUR501 |
| F | HOH605 |
| F | HOH638 |
