5Y4R
Structure of a methyltransferase complex
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0008168 | molecular_function | methyltransferase activity |
A | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
A | 0008983 | molecular_function | protein-glutamate O-methyltransferase activity |
A | 0032259 | biological_process | methylation |
B | 0008168 | molecular_function | methyltransferase activity |
B | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
B | 0008983 | molecular_function | protein-glutamate O-methyltransferase activity |
B | 0032259 | biological_process | methylation |
C | 0000166 | molecular_function | nucleotide binding |
C | 0019932 | biological_process | obsolete second-messenger-mediated signaling |
C | 0035438 | molecular_function | cyclic-di-GMP binding |
D | 0000166 | molecular_function | nucleotide binding |
D | 0019932 | biological_process | obsolete second-messenger-mediated signaling |
D | 0035438 | molecular_function | cyclic-di-GMP binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | binding site for residue SO4 A 301 |
Chain | Residue |
A | ARG191 |
A | GLU195 |
A | PHE196 |
site_id | AC2 |
Number of Residues | 3 |
Details | binding site for residue SO4 A 302 |
Chain | Residue |
A | LYS154 |
A | PHE196 |
A | ALA198 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue SO4 A 303 |
Chain | Residue |
A | ASP258 |
A | HIS259 |
C | ARG60 |
A | ARG229 |
A | LEU256 |
A | PRO257 |
site_id | AC4 |
Number of Residues | 6 |
Details | binding site for residue SO4 A 304 |
Chain | Residue |
A | ARG58 |
A | GLY59 |
A | GLY60 |
A | LEU61 |
A | ARG62 |
A | GLU63 |
site_id | AC5 |
Number of Residues | 2 |
Details | binding site for residue SO4 A 305 |
Chain | Residue |
A | VAL263 |
A | ARG272 |
site_id | AC6 |
Number of Residues | 15 |
Details | binding site for residue C2E D 201 |
Chain | Residue |
B | LYS135 |
C | ARG79 |
C | C2E201 |
C | C2E202 |
C | HOH315 |
D | GLU7 |
D | ARG8 |
D | ARG9 |
D | ARG13 |
D | TRP77 |
D | ARG79 |
D | C2E202 |
D | HOH309 |
D | HOH316 |
D | HOH320 |
site_id | AC7 |
Number of Residues | 17 |
Details | binding site for residue C2E D 202 |
Chain | Residue |
D | ARG8 |
D | ARG9 |
D | ARG10 |
D | PHE11 |
D | ARG13 |
D | ASP35 |
D | VAL36 |
D | SER37 |
D | HIS39 |
D | GLY40 |
D | ILE41 |
D | LEU42 |
D | TRP77 |
D | PHE85 |
D | GLU86 |
D | C2E201 |
D | HOH306 |
site_id | AC8 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 301 |
Chain | Residue |
B | ARG191 |
B | VAL194 |
B | GLU195 |
B | PHE196 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 302 |
Chain | Residue |
B | LYS154 |
B | PHE196 |
B | ALA198 |
B | HOH429 |
site_id | AD1 |
Number of Residues | 7 |
Details | binding site for residue SO4 B 303 |
Chain | Residue |
B | ARG229 |
B | ASN255 |
B | LEU256 |
B | PRO257 |
B | ASP258 |
B | HIS259 |
B | HOH406 |
site_id | AD2 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 304 |
Chain | Residue |
B | ARG234 |
B | GLY237 |
B | SO4305 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue SO4 B 305 |
Chain | Residue |
B | SER204 |
B | TYR205 |
B | ARG234 |
B | SO4304 |
B | HOH401 |
site_id | AD4 |
Number of Residues | 6 |
Details | binding site for residue SO4 B 306 |
Chain | Residue |
B | ARG12 |
B | GLY24 |
B | SER25 |
B | ASN26 |
B | LYS27 |
B | GLN28 |
site_id | AD5 |
Number of Residues | 1 |
Details | binding site for residue SO4 B 307 |
Chain | Residue |
B | ARG272 |
site_id | AD6 |
Number of Residues | 19 |
Details | binding site for residue C2E C 201 |
Chain | Residue |
C | HOH307 |
D | C2E201 |
C | ARG8 |
C | ARG9 |
C | ARG10 |
C | ARG13 |
C | ASP35 |
C | VAL36 |
C | SER37 |
C | HIS39 |
C | GLY40 |
C | ILE41 |
C | LEU42 |
C | TRP77 |
C | PHE85 |
C | GLU86 |
C | C2E202 |
C | HOH303 |
C | HOH306 |
site_id | AD7 |
Number of Residues | 14 |
Details | binding site for residue C2E C 202 |
Chain | Residue |
B | LEU131 |
B | GLY132 |
B | LYS135 |
C | GLU7 |
C | ARG8 |
C | ARG9 |
C | ARG13 |
C | TRP77 |
C | ARG79 |
C | C2E201 |
C | HOH301 |
C | HOH310 |
C | HOH315 |
D | C2E201 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000269|PubMed:21310957 |
Chain | Residue | Details |
D | ASP6 | |
B | ARG78 | |
B | GLU115 | |
B | ASP144 | |
B | ASN200 | |
B | ARG217 | |
D | TRP77 | |
C | ASP6 | |
C | TRP77 | |
A | ASP144 | |
A | ASN200 | |
A | ARG217 | |
B | ASN72 | |
B | THR74 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | SITE: Important for c-di-GMP binding |
Chain | Residue | Details |
D | GLY40 | |
C | GLY40 |