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5Y4P

Crystal structure of Trypanosoma cruzi spermidine synthase in complex with 5-methoxy-2-(5-methyl-4,5-dihydro-1H-imidazol-2-yl)phenol

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004766molecular_functionspermidine synthase activity
A0006596biological_processpolyamine biosynthetic process
A0016740molecular_functiontransferase activity
B0003824molecular_functioncatalytic activity
B0004766molecular_functionspermidine synthase activity
B0006596biological_processpolyamine biosynthetic process
B0016740molecular_functiontransferase activity
C0003824molecular_functioncatalytic activity
C0004766molecular_functionspermidine synthase activity
C0006596biological_processpolyamine biosynthetic process
C0016740molecular_functiontransferase activity
D0003824molecular_functioncatalytic activity
D0004766molecular_functionspermidine synthase activity
D0006596biological_processpolyamine biosynthetic process
D0016740molecular_functiontransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues15
Detailsbinding site for residue S4M A 301
ChainResidue
AGLN40
AASP120
AVAL123
AASP149
AGLY150
AASP168
ATHR169
ALEU59
AGLN64
AHIS74
AGLY95
AASP98
AVAL117
AASP118
AILE119

site_idAC2
Number of Residues9
Detailsbinding site for residue 8QO A 302
ChainResidue
AGLU14
AMET24
ALEU26
ATRP53
AILE63
ATHR66
AASP69
ATYR73
BGLN22

site_idAC3
Number of Residues14
Detailsbinding site for residue S4M B 301
ChainResidue
BGLN40
BGLN64
BHIS74
BGLY95
BASP98
BVAL117
BASP118
BILE119
BASP120
BVAL123
BASP149
BGLY150
BASP168
BTHR169

site_idAC4
Number of Residues10
Detailsbinding site for residue 8QO B 302
ChainResidue
AGLN22
BGLU14
BMET24
BTRP53
BILE63
BASP69
BTYR73
BTHR236
BTYR237
BPRO238

site_idAC5
Number of Residues17
Detailsbinding site for residue S4M C 301
ChainResidue
CGLN40
CLEU59
CGLN64
CHIS74
CGLY95
CASP98
CVAL117
CASP118
CILE119
CASP120
CVAL123
CGLY148
CASP149
CGLY150
CASP168
CTHR169
CHOH403

site_idAC6
Number of Residues10
Detailsbinding site for residue 8QO C 302
ChainResidue
CGLU14
CMET24
CLEU26
CTRP53
CILE63
CASP69
CTYR73
CTHR236
CTYR237
CPRO238

site_idAC7
Number of Residues14
Detailsbinding site for residue S4M D 301
ChainResidue
DGLN40
DGLN64
DHIS74
DGLY95
DASP98
DVAL117
DASP118
DILE119
DVAL123
DASP149
DGLY150
DASP168
DTHR169
DGLN201

site_idAC8
Number of Residues8
Detailsbinding site for residue 8QO D 302
ChainResidue
DGLU14
DMET24
DTRP53
DILE63
DASP69
DTYR73
DTHR236
DTYR237

Functional Information from PROSITE/UniProt
site_idPS01330
Number of Residues14
DetailsPABS_1 Polyamine biosynthesis (PABS) domain signature. VLIIGGGdGgvLrE
ChainResidueDetails
AVAL91-GLU104

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PDB entries from 2024-07-17

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