Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5Y0S

Crystal structure of apo Thermotoga maritima TmcAL(Form II)

Functional Information from GO Data
ChainGOidnamespacecontents
A0000049molecular_functiontRNA binding
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0016874molecular_functionligase activity
A0016879molecular_functionligase activity, forming carbon-nitrogen bonds
B0000049molecular_functiontRNA binding
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006400biological_processtRNA modification
B0008033biological_processtRNA processing
B0016874molecular_functionligase activity
B0016879molecular_functionligase activity, forming carbon-nitrogen bonds
C0000049molecular_functiontRNA binding
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0006400biological_processtRNA modification
C0008033biological_processtRNA processing
C0016874molecular_functionligase activity
C0016879molecular_functionligase activity, forming carbon-nitrogen bonds
D0000049molecular_functiontRNA binding
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0006400biological_processtRNA modification
D0008033biological_processtRNA processing
D0016874molecular_functionligase activity
D0016879molecular_functionligase activity, forming carbon-nitrogen bonds
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue EDO A 501
ChainResidue
ALYS332
AGLN335
ALEU359
AVAL379
AHOH623
AHOH690
AHOH725

site_idAC2
Number of Residues3
Detailsbinding site for residue EDO A 502
ChainResidue
AHOH603
ATHR331
ALYS332

site_idAC3
Number of Residues5
Detailsbinding site for residue EDO A 503
ChainResidue
AMET365
ASER366
ALEU367
ATYR368
AARG369

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO A 504
ChainResidue
APHE319
AGLU320
ALEU390
ALYS393
AHOH638

site_idAC5
Number of Residues4
Detailsbinding site for residue EDO A 505
ChainResidue
ALEU359
APRO360
AILE361
AHOH715

site_idAC6
Number of Residues4
Detailsbinding site for residue EDO A 506
ChainResidue
ASER366
ALYS370
CVAL285
CGLN289

site_idAC7
Number of Residues3
Detailsbinding site for residue EDO A 507
ChainResidue
AARG245
AARG412
AHOH621

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO B 501
ChainResidue
BPHE319
BGLU320
BASN322
BPHE325
BLEU390
BLYS393
BHOH620

site_idAC9
Number of Residues5
Detailsbinding site for residue EDO B 502
ChainResidue
BGLU251
BGLY254
BASP255
BTYR293
BARG294

site_idAD1
Number of Residues2
Detailsbinding site for residue EDO B 503
ChainResidue
BARG311
BEDO506

site_idAD2
Number of Residues8
Detailsbinding site for residue EDO B 504
ChainResidue
APHE256
APHE401
BPHE256
BPHE401
BHOH643
BHOH647
BHOH648
BHOH650

site_idAD3
Number of Residues2
Detailsbinding site for residue EDO B 505
ChainResidue
BTHR331
BLYS332

site_idAD4
Number of Residues3
Detailsbinding site for residue EDO B 506
ChainResidue
BTYR293
BARG294
BEDO503

site_idAD5
Number of Residues5
Detailsbinding site for residue EDO C 501
ChainResidue
CVAL7
CVAL8
CGLU9
CLEU171
CHOH763

site_idAD6
Number of Residues5
Detailsbinding site for residue EDO C 502
ChainResidue
CGLU251
CGLY254
CASP255
CTYR293
CARG294

site_idAD7
Number of Residues4
Detailsbinding site for residue EDO C 503
ChainResidue
CGLY80
CPHE84
CLYS181
CASN330

site_idAD8
Number of Residues7
Detailsbinding site for residue EDO C 504
ChainResidue
CPHE401
CHOH609
CHOH653
DPHE256
DPHE401
DHOH638
DHOH669

site_idAD9
Number of Residues3
Detailsbinding site for residue EDO C 505
ChainResidue
CGLU109
CARG113
CHOH614

site_idAE1
Number of Residues3
Detailsbinding site for residue EDO C 506
ChainResidue
CASN252
CHOH695
CHOH702

site_idAE2
Number of Residues5
Detailsbinding site for residue EDO C 507
ChainResidue
CPHE319
CGLU320
CASN322
CLYS393
CHOH606

site_idAE3
Number of Residues4
Detailsbinding site for residue EDO D 501
ChainResidue
DGLN335
DPRO378
DVAL379
DASP380

site_idAE4
Number of Residues3
Detailsbinding site for residue EDO D 502
ChainResidue
BVAL285
BGLN289
DLYS370

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01539
ChainResidueDetails
AGLY102
DGLY102
DASN168
DARG193
AASN168
AARG193
BGLY102
BASN168
BARG193
CGLY102
CASN168
CARG193

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon