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5XTM

Crystal structure of PhoRpp38 bound to a K-turn in P12.2 helix

Functional Information from GO Data
ChainGOidnamespacecontents
A0001682biological_processtRNA 5'-leader removal
A0003723molecular_functionRNA binding
A0003735molecular_functionstructural constituent of ribosome
A0004526molecular_functionribonuclease P activity
A0005737cellular_componentcytoplasm
A0005840cellular_componentribosome
A0006412biological_processtranslation
A0008033biological_processtRNA processing
A0019843molecular_functionrRNA binding
A0042254biological_processribosome biogenesis
A1990904cellular_componentribonucleoprotein complex
C0001682biological_processtRNA 5'-leader removal
C0003723molecular_functionRNA binding
C0003735molecular_functionstructural constituent of ribosome
C0004526molecular_functionribonuclease P activity
C0005737cellular_componentcytoplasm
C0005840cellular_componentribosome
C0006412biological_processtranslation
C0008033biological_processtRNA processing
C0019843molecular_functionrRNA binding
C0042254biological_processribosome biogenesis
C1990904cellular_componentribonucleoprotein complex
Functional Information from PDB Data
site_idAC1
Number of Residues2
Detailsbinding site for residue MG A 201
ChainResidue
AGLU86
AHOH349

site_idAC2
Number of Residues6
Detailsbinding site for residue MG B 101
ChainResidue
BG23
BHOH202
BHOH211
BHOH228
BHOH239
BHOH292

site_idAC3
Number of Residues1
Detailsbinding site for residue MG B 102
ChainResidue
BC47

site_idAC4
Number of Residues6
Detailsbinding site for residue MG B 103
ChainResidue
BG7
BA22
BG23
BHOH274
BHOH280
BHOH291

site_idAC5
Number of Residues4
Detailsbinding site for residue MG B 104
ChainResidue
BHOH225
BHOH256
BHOH260
BHOH284

site_idAC6
Number of Residues4
Detailsbinding site for residue MG B 105
ChainResidue
BA43
BA44
BG45
BC46

site_idAC7
Number of Residues4
Detailsbinding site for residue MG B 106
ChainResidue
BA13
BHOH250
BHOH272
BHOH283

site_idAC8
Number of Residues3
Detailsbinding site for residue MG B 107
ChainResidue
BG8
BHOH236
BHOH263

site_idAC9
Number of Residues1
Detailsbinding site for residue MG B 108
ChainResidue
BA14

site_idAD1
Number of Residues2
Detailsbinding site for residue MG B 109
ChainResidue
BGTP1
BG2

site_idAD2
Number of Residues1
Detailsbinding site for residue MG B 110
ChainResidue
BU42

site_idAD3
Number of Residues2
Detailsbinding site for residue MG B 111
ChainResidue
BGTP1
BMG112

site_idAD4
Number of Residues2
Detailsbinding site for residue MG B 112
ChainResidue
BGTP1
BMG111

site_idAD5
Number of Residues5
Detailsbinding site for residue MG C 201
ChainResidue
ALYS124
CGLU11
CHOH339
CHOH348
CHOH350

site_idAD6
Number of Residues3
Detailsbinding site for residue MG C 202
ChainResidue
CGLU86
CHOH313
CHOH332

site_idAD7
Number of Residues4
Detailsbinding site for residue MG D 101
ChainResidue
DU10
DG11
DHOH244
DHOH274

site_idAD8
Number of Residues6
Detailsbinding site for residue MG D 102
ChainResidue
DA4
DU5
DG6
DHOH214
DHOH283
DHOH289

site_idAD9
Number of Residues7
Detailsbinding site for residue MG D 103
ChainResidue
DG6
DU34
DU35
DHOH248
DHOH249
DHOH262
DHOH273

site_idAE1
Number of Residues1
Detailsbinding site for residue MG D 104
ChainResidue
DC47

site_idAE2
Number of Residues5
Detailsbinding site for residue MG D 105
ChainResidue
DG2
DU3
DA43
DG45
DC46

site_idAE3
Number of Residues7
Detailsbinding site for residue MG D 106
ChainResidue
BHOH264
BHOH285
DG8
DHOH224
DHOH237
DHOH277
DHOH300

site_idAE4
Number of Residues3
Detailsbinding site for residue MG D 107
ChainResidue
DGTP1
DG2
DHOH298

site_idAE5
Number of Residues5
Detailsbinding site for residue MG D 108
ChainResidue
DG23
DHOH222
DHOH255
DHOH267
DHOH282

site_idAE6
Number of Residues1
Detailsbinding site for residue MG D 109
ChainResidue
DGTP1

site_idAE7
Number of Residues7
Detailsbinding site for Di-nucleotide GTP D 1 and G D 2
ChainResidue
DU3
DG45
DC46
DC47
DMG105
DMG107
DMG109

Functional Information from PROSITE/UniProt
site_idPS01082
Number of Residues18
DetailsRIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CeekeIPYiyVpSKkeLG
ChainResidueDetails
ACYS71-GLY88

225946

PDB entries from 2024-10-09

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