5XTM
Crystal structure of PhoRpp38 bound to a K-turn in P12.2 helix
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B1 |
Synchrotron site | SPring-8 |
Beamline | BL26B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-09-23 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 52.070, 71.720, 91.280 |
Unit cell angles | 90.00, 105.58, 90.00 |
Refinement procedure
Resolution | 39.264 - 2.100 |
R-factor | 0.1981 |
Rwork | 0.197 |
R-free | 0.22210 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2czw |
RMSD bond length | 0.002 |
RMSD bond angle | 0.581 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.260 | 39.260 | 2.230 |
High resolution limit [Å] | 2.100 | 6.230 | 2.100 |
Rmerge | 0.085 | 0.025 | 0.768 |
Rmeas | 0.096 | 0.029 | 0.868 |
Total number of observations | 177058 | ||
Number of reflections | 37804 | 1508 | 6007 |
<I/σ(I)> | 13.7 | 43.29 | 2.15 |
Completeness [%] | 99.5 | 98.6 | 98.4 |
Redundancy | 4.684 | 4.404 | 4.664 |
CC(1/2) | 0.998 | 0.999 | 0.723 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | Na-Cacodylate, PEG 400, Mg-Acetate |