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5XDX

Bovine heart cytochrome c oxidase in the reduced state with pH 7.3 at 1.99 angstrom resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0004129molecular_functioncytochrome-c oxidase activity
A0005739cellular_componentmitochondrion
A0005743cellular_componentmitochondrial inner membrane
A0005751cellular_componentmitochondrial respiratory chain complex IV
A0006119biological_processoxidative phosphorylation
A0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
A0009060biological_processaerobic respiration
A0015990biological_processelectron transport coupled proton transport
A0016020cellular_componentmembrane
A0020037molecular_functionheme binding
A0045277cellular_componentrespiratory chain complex IV
A0046872molecular_functionmetal ion binding
A0070469cellular_componentrespirasome
B0004129molecular_functioncytochrome-c oxidase activity
B0005507molecular_functioncopper ion binding
B0005739cellular_componentmitochondrion
B0005743cellular_componentmitochondrial inner membrane
B0016020cellular_componentmembrane
B0016491molecular_functionoxidoreductase activity
B0022900biological_processelectron transport chain
B0042773biological_processATP synthesis coupled electron transport
B0045277cellular_componentrespiratory chain complex IV
B0046872molecular_functionmetal ion binding
B0070469cellular_componentrespirasome
B1902600biological_processproton transmembrane transport
C0004129molecular_functioncytochrome-c oxidase activity
C0005739cellular_componentmitochondrion
C0005743cellular_componentmitochondrial inner membrane
C0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
C0008535biological_processrespiratory chain complex IV assembly
C0009055molecular_functionelectron transfer activity
C0016020cellular_componentmembrane
C0019646biological_processaerobic electron transport chain
C0022904biological_processrespiratory electron transport chain
C0045277cellular_componentrespiratory chain complex IV
C1902600biological_processproton transmembrane transport
D0005751cellular_componentmitochondrial respiratory chain complex IV
D0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
E0005743cellular_componentmitochondrial inner membrane
E0005751cellular_componentmitochondrial respiratory chain complex IV
E0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
F0005740cellular_componentmitochondrial envelope
F0005751cellular_componentmitochondrial respiratory chain complex IV
F0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
G0005743cellular_componentmitochondrial inner membrane
G0005751cellular_componentmitochondrial respiratory chain complex IV
H0005739cellular_componentmitochondrion
H0005743cellular_componentmitochondrial inner membrane
H0006119biological_processoxidative phosphorylation
H0045277cellular_componentrespiratory chain complex IV
I0005739cellular_componentmitochondrion
I0005743cellular_componentmitochondrial inner membrane
I0006119biological_processoxidative phosphorylation
I0045277cellular_componentrespiratory chain complex IV
J0005746cellular_componentmitochondrial respirasome
J0005751cellular_componentmitochondrial respiratory chain complex IV
J0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
K0005746cellular_componentmitochondrial respirasome
K0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
L0005751cellular_componentmitochondrial respiratory chain complex IV
L0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
M0005751cellular_componentmitochondrial respiratory chain complex IV
M0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
N0004129molecular_functioncytochrome-c oxidase activity
N0005739cellular_componentmitochondrion
N0005743cellular_componentmitochondrial inner membrane
N0005751cellular_componentmitochondrial respiratory chain complex IV
N0006119biological_processoxidative phosphorylation
N0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
N0009060biological_processaerobic respiration
N0015990biological_processelectron transport coupled proton transport
N0016020cellular_componentmembrane
N0020037molecular_functionheme binding
N0045277cellular_componentrespiratory chain complex IV
N0046872molecular_functionmetal ion binding
N0070469cellular_componentrespirasome
O0004129molecular_functioncytochrome-c oxidase activity
O0005507molecular_functioncopper ion binding
O0005739cellular_componentmitochondrion
O0005743cellular_componentmitochondrial inner membrane
O0016020cellular_componentmembrane
O0016491molecular_functionoxidoreductase activity
O0022900biological_processelectron transport chain
O0042773biological_processATP synthesis coupled electron transport
O0045277cellular_componentrespiratory chain complex IV
O0046872molecular_functionmetal ion binding
O0070469cellular_componentrespirasome
O1902600biological_processproton transmembrane transport
P0004129molecular_functioncytochrome-c oxidase activity
P0005739cellular_componentmitochondrion
P0005743cellular_componentmitochondrial inner membrane
P0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
P0008535biological_processrespiratory chain complex IV assembly
P0009055molecular_functionelectron transfer activity
P0016020cellular_componentmembrane
P0019646biological_processaerobic electron transport chain
P0022904biological_processrespiratory electron transport chain
P0045277cellular_componentrespiratory chain complex IV
P1902600biological_processproton transmembrane transport
Q0005751cellular_componentmitochondrial respiratory chain complex IV
Q0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
R0005743cellular_componentmitochondrial inner membrane
R0005751cellular_componentmitochondrial respiratory chain complex IV
R0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
S0005740cellular_componentmitochondrial envelope
S0005751cellular_componentmitochondrial respiratory chain complex IV
S0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
T0005743cellular_componentmitochondrial inner membrane
T0005751cellular_componentmitochondrial respiratory chain complex IV
U0005739cellular_componentmitochondrion
U0005743cellular_componentmitochondrial inner membrane
U0006119biological_processoxidative phosphorylation
U0045277cellular_componentrespiratory chain complex IV
V0005739cellular_componentmitochondrion
V0005743cellular_componentmitochondrial inner membrane
V0006119biological_processoxidative phosphorylation
V0045277cellular_componentrespiratory chain complex IV
W0005746cellular_componentmitochondrial respirasome
W0005751cellular_componentmitochondrial respiratory chain complex IV
W0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
X0005746cellular_componentmitochondrial respirasome
X0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
Y0005751cellular_componentmitochondrial respiratory chain complex IV
Y0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
Z0005751cellular_componentmitochondrial respiratory chain complex IV
Z0006123biological_processmitochondrial electron transport, cytochrome c to oxygen
Functional Information from PDB Data
site_idAC1
Number of Residues28
Detailsbinding site for residue HEA A 601
ChainResidue
ATHR31
AVAL70
AILE73
AGLY125
ATRP126
ATYR371
APHE377
AHIS378
ASER382
APHE393
AMET417
ASER34
APHE425
AGLN428
AARG438
AARG439
ATYR440
AVAL465
AHOH716
AHOH748
AHOH755
AILE37
AARG38
ATYR54
AVAL58
AHIS61
AALA62
AMET65

site_idAC2
Number of Residues29
Detailsbinding site for residue HEA A 602
ChainResidue
ATRP126
ATRP236
AVAL243
ATYR244
AILE247
AHIS290
AHIS291
ATHR309
AILE312
ATHR316
AGLY317
AGLY352
AGLY355
AILE356
ALEU358
AALA359
AASP364
AHIS368
AVAL373
AHIS376
APHE377
AVAL380
ALEU381
AARG438
AHOH735
AHOH758
AHOH824
AHOH852
BILE34

site_idAC3
Number of Residues3
Detailsbinding site for residue CU A 603
ChainResidue
AHIS240
AHIS290
AHIS291

site_idAC4
Number of Residues6
Detailsbinding site for residue MG A 604
ChainResidue
AHIS368
AASP369
BGLU198
BHOH407
BHOH418
BHOH538

site_idAC5
Number of Residues4
Detailsbinding site for residue NA A 605
ChainResidue
AGLU40
AGLY45
ASER441
AHOH832

site_idAC6
Number of Residues12
Detailsbinding site for residue TGL A 606
ChainResidue
APHE346
AASN422
APHE426
APHE430
ALEU433
BLEU7
BGLY8
BLEU28
BPHE32
BSER35
BLEU39
IARG43

site_idAC7
Number of Residues16
Detailsbinding site for residue PGV A 607
ChainResidue
APHE94
APRO95
AARG96
AMET97
APHE148
AHOH766
AHOH820
CHIS9
CASN50
CTRP57
CTRP58
CGLU64
CHIS71
CGLY82
CGLU90
CPEK303

site_idAC8
Number of Residues5
Detailsbinding site for residue EDO A 608
ChainResidue
CTHR5
FPRO30
FASN32
FARG56
AGLU507

site_idAC9
Number of Residues6
Detailsbinding site for residue EDO A 609
ChainResidue
ATYR260
ATYR261
AHIS395
ATRP494
AHOH721
AHOH726

site_idAD1
Number of Residues4
Detailsbinding site for residue EDO A 610
ChainResidue
AALA137
AHOH718
AHOH740
BGLN103

site_idAD2
Number of Residues8
Detailsbinding site for residue EDO A 611
ChainResidue
APHE393
AVAL394
ALEU405
AALA410
AHIS413
AMET468
AILE471
AHOH747

site_idAD3
Number of Residues7
Detailsbinding site for residue EDO A 612
ChainResidue
AHIS256
ALYS265
ATHR490
AASN491
AHOH756
AHOH803
AHOH828

site_idAD4
Number of Residues2
Detailsbinding site for residue EDO A 613
ChainResidue
ATHR489
AHOH711

site_idAD5
Number of Residues8
Detailsbinding site for residue EDO A 614
ChainResidue
ALEU483
ATHR488
ATRP494
AGLY497
ACYS498
AHOH702
AHOH703
DTYR11

site_idAD6
Number of Residues9
Detailsbinding site for residue EDO A 615
ChainResidue
ATYR19
AASN80
AASN98
ASER101
AGLY160
AASN163
APHE164
AHOH704
AHOH920

site_idAD7
Number of Residues8
Detailsbinding site for residue EDO A 616
ChainResidue
AMET71
APRO72
AILE75
ASER157
AHOH712
AHOH715
AHOH749
AHOH920

site_idAD8
Number of Residues6
Detailsbinding site for residue CUA B 301
ChainResidue
BHIS161
BCYS196
BGLU198
BCYS200
BHIS204
BMET207

site_idAD9
Number of Residues14
Detailsbinding site for residue CHD B 302
ChainResidue
AMET271
ATRP275
BGLN59
BGLU62
BTHR63
BTHR66
BHOH475
BHOH536
TARG14
TARG17
TPHE21
TGLY22
TPEK103
THOH205

site_idAE1
Number of Residues5
Detailsbinding site for residue EDO B 303
ChainResidue
BGLU157
BHOH401
BHOH423
BHOH437
CEDO311

site_idAE2
Number of Residues10
Detailsbinding site for residue CHD C 301
ChainResidue
AHIS233
AASP300
ATHR301
ATYR304
CTRP99
CHIS103
CPGV306
CHOH461
CHOH485
PLEU127

site_idAE3
Number of Residues4
Detailsbinding site for residue NA C 302
ChainResidue
CHIS148
CHIS232
CGLU236
CHOH448

site_idAE4
Number of Residues20
Detailsbinding site for residue PEK C 303
ChainResidue
AHIS151
AVAL155
AALA203
APGV607
CTYR181
CTYR182
CALA184
CPHE186
CTHR187
CILE188
CPHE198
CGLY202
CPHE203
GTRP62
GTHR68
GPHE69
GPHE70
GHIS71
GASN76
GHOH225

site_idAE5
Number of Residues10
Detailsbinding site for residue PEK C 304
ChainResidue
CLYS157
CHIS158
CGLN161
FALA1
GARG17
GCDL101
NSER279
OGLN59
OTHR66
OCHD301

site_idAE6
Number of Residues20
Detailsbinding site for residue PGV C 305
ChainResidue
CMET54
CTRP58
CVAL61
CSER65
CTHR66
CGLU90
CILE210
CPHE214
CARG221
CHIS226
CPHE227
CTHR228
CHIS231
CHIS232
CPHE233
CGLY234
CHOH411
CHOH425
CHOH463
FHOH226

site_idAE7
Number of Residues6
Detailsbinding site for residue PGV C 306
ChainResidue
CTRP99
CHIS103
CALA107
CCHD301
HASN24
TALA1

site_idAE8
Number of Residues14
Detailsbinding site for residue CDL C 307
ChainResidue
CMET51
CLEU52
CTYR55
CTRP58
CARG59
CARG63
CPHE67
CVAL217
CLYS224
CHIS226
CHOH405
CHOH470
JLYS8
JHOH201

site_idAE9
Number of Residues5
Detailsbinding site for residue CHD C 308
ChainResidue
CARG156
CPHE164
CLEU223
CHOH499
JPHE1

site_idAF1
Number of Residues1
Detailsbinding site for residue EDO C 309
ChainResidue
CMET44

site_idAF2
Number of Residues2
Detailsbinding site for residue EDO C 310
ChainResidue
CMET40
CDMU312

site_idAF3
Number of Residues6
Detailsbinding site for residue EDO C 311
ChainResidue
BEDO303
BHOH423
CGLU111
CHOH412
CHOH478
HHOH113

site_idAF4
Number of Residues7
Detailsbinding site for residue DMU C 312
ChainResidue
CASN38
CSER39
CTHR41
CEDO310
CDMU313
JGLY41
JTYR45

site_idAF5
Number of Residues12
Detailsbinding site for residue DMU C 313
ChainResidue
ALEU110
CSER29
CMET33
CPHE37
CDMU312
JTYR45
JSER46
JTYR48
JCYS49
JLEU50
JTRP52
JALA53

site_idAF6
Number of Residues11
Detailsbinding site for residue TGL D 201
ChainResidue
ATRP334
ALEU342
APHE414
BTHR47
BLYS49
DARG73
DTHR75
DGLU77
DTRP78
IARG16
IHIS20

site_idAF7
Number of Residues5
Detailsbinding site for residue EDO D 202
ChainResidue
DPRO14
DASP26
DEDO203
EARG30
FEDO104

site_idAF8
Number of Residues6
Detailsbinding site for residue EDO D 203
ChainResidue
DTYR22
DASP26
DEDO202
ETRP27
ELYS31
EASN34

site_idAF9
Number of Residues17
Detailsbinding site for residue PSC E 201
ChainResidue
APHE268
APHE321
AHIS328
BLEU37
BILE41
BHIS52
BMET56
BASP57
BTRP65
BLEU68
EGLU6
ETHR7
EASP8
EPHE11
EHOH342
IARG10
IALA14

site_idAG1
Number of Residues4
Detailsbinding site for residue EDO E 202
ChainResidue
ETYR18
ELYS21
EGLU28
EHOH301

site_idAG2
Number of Residues4
Detailsbinding site for residue ZN F 101
ChainResidue
FCYS60
FCYS62
FCYS82
FCYS85

site_idAG3
Number of Residues5
Detailsbinding site for residue EDO F 102
ChainResidue
FASP9
FGLU17
FMET21
FHOH204
FHOH222

site_idAG4
Number of Residues8
Detailsbinding site for residue EDO F 103
ChainResidue
ATHR490
AHOH787
FSER67
FTHR68
FVAL69
FTRP71
FHOH218
FHOH233

site_idAG5
Number of Residues6
Detailsbinding site for residue EDO F 104
ChainResidue
DEDO202
FPHE72
FGLN80
FARG81
FHOH209
FHOH254

site_idAG6
Number of Residues16
Detailsbinding site for residue CDL G 101
ChainResidue
CASN125
CLEU127
CLEU250
CPEK304
GSER27
GCYS31
GASN34
GLEU37
GHIS38
GHOH239
NASP300
NSER307
NILE311
OALA77
OLEU78
OTYR85

site_idAG7
Number of Residues5
Detailsbinding site for residue PEK G 102
ChainResidue
GSER2
GTPO11
PTHR95
PTRP240
PVAL247

site_idAG8
Number of Residues5
Detailsbinding site for residue CHD J 101
ChainResidue
ALEU7
JARG33
JMET36
JTHR37
JLEU40

site_idAG9
Number of Residues13
Detailsbinding site for residue TGL L 101
ChainResidue
ATHR17
APHE22
ATRP25
ALEU113
APHE400
LILE11
LPRO12
LPHE13
LSER14
LARG20
LMET24
LPHE29
LSER31

site_idAH1
Number of Residues13
Detailsbinding site for residue PGV M 101
ChainResidue
AASN406
ATHR408
ATRP409
AARG480
DPHE87
KHOH112
MALA3
MLYS4
MPRO12
MGLN15
MLEU19
MHOH221
MHOH222

site_idAH2
Number of Residues6
Detailsbinding site for residue DMU M 102
ChainResidue
APHE459
DTRP98
MLEU28
MTRP32
MTYR35
MHIS36

site_idAH3
Number of Residues30
Detailsbinding site for residue HEA N 601
ChainResidue
NMET28
NTHR31
NSER34
NILE37
NARG38
NTYR54
NVAL58
NHIS61
NALA62
NMET65
NVAL70
NILE73
NGLY125
NTRP126
NTYR371
NPHE377
NHIS378
NLEU381
NSER382
NPHE393
NMET417
NPHE425
NGLN428
NARG438
NARG439
NTYR440
NVAL465
NHOH732
NHOH749
NHOH762

site_idAH4
Number of Residues30
Detailsbinding site for residue HEA N 602
ChainResidue
NTRP126
NTRP236
NVAL243
NTYR244
NILE247
NHIS290
NHIS291
NTHR309
NILE312
NTHR316
NGLY317
NGLY352
NGLY355
NILE356
NLEU358
NALA359
NASP364
NHIS368
NVAL373
NHIS376
NPHE377
NVAL380
NLEU381
NARG438
NHOH746
NHOH786
NHOH790
NHOH801
OILE34
OILE72

site_idAH5
Number of Residues3
Detailsbinding site for residue CU N 603
ChainResidue
NHIS240
NHIS290
NHIS291

site_idAH6
Number of Residues6
Detailsbinding site for residue MG N 604
ChainResidue
NHIS368
NASP369
NHOH897
OGLU198
OHOH404
OHOH432

site_idAH7
Number of Residues4
Detailsbinding site for residue NA N 605
ChainResidue
NGLU40
NGLY45
NSER441
NHOH850

site_idAH8
Number of Residues11
Detailsbinding site for residue PGV N 606
ChainResidue
NASN406
NTHR408
NTRP409
NHOH817
QPHE87
XASP8
XPHE9
ZTHR10
ZPRO12
ZGLN15
ZLEU19

site_idAH9
Number of Residues19
Detailsbinding site for residue PGV N 607
ChainResidue
NPHE94
NPRO95
NARG96
NMET97
NMET100
NPHE148
NHOH798
NHOH830
PHIS9
PGLY20
PASN50
PTRP57
PTRP58
PGLU64
PHIS71
PLEU79
PGLY82
PGLU90
TPEK102

site_idAI1
Number of Residues7
Detailsbinding site for residue EDO N 608
ChainResidue
NTYR260
NTYR261
NHIS395
NTRP494
NHOH775
ZILE1
ZHOH203

site_idAI2
Number of Residues7
Detailsbinding site for residue EDO N 609
ChainResidue
NGLU507
NHOH769
PTHR5
SPRO30
SASN32
SPRO50
SARG56

site_idAI3
Number of Residues4
Detailsbinding site for residue EDO N 610
ChainResidue
NALA137
NHOH705
NHOH745
OGLN103

site_idAI4
Number of Residues6
Detailsbinding site for residue EDO N 611
ChainResidue
NLEU483
NTRP494
NGLY497
NCYS498
NHOH747
QTYR11

site_idAI5
Number of Residues8
Detailsbinding site for residue EDO N 612
ChainResidue
NHIS256
NLYS265
NTHR490
NASN491
NEDO613
NHOH735
NHOH815
NHOH847

site_idAI6
Number of Residues9
Detailsbinding site for residue EDO N 613
ChainResidue
NMET86
NPRO182
NHIS256
NTHR490
NASN491
NGLU493
NEDO612
NHOH714
SEDO102

site_idAI7
Number of Residues8
Detailsbinding site for residue EDO N 614
ChainResidue
NMET71
NPRO72
NILE75
NLEU105
NSER157
NHOH709
NHOH740
NHOH884

site_idAI8
Number of Residues9
Detailsbinding site for residue EDO N 615
ChainResidue
NTYR19
NASN80
NASN98
NSER101
NGLY160
NASN163
NPHE164
NHOH707
NHOH884

site_idAI9
Number of Residues2
Detailsbinding site for residue EDO N 616
ChainResidue
NTHR489
NHOH734

site_idAJ1
Number of Residues5
Detailsbinding site for residue EDO N 617
ChainResidue
NGLY269
NGLY272
OALA58
OGLN59
OHOH509

site_idAJ2
Number of Residues13
Detailsbinding site for residue CHD O 301
ChainResidue
CPEK304
GARG14
GARG17
GPHE21
GGLY22
NMET271
OGLU62
OTHR63
OTHR66
OHOH414
OHOH424
OHOH441
OHOH509

site_idAJ3
Number of Residues8
Detailsbinding site for residue TGL O 302
ChainResidue
NPHE346
NASN422
NPHE426
NLEU433
OLEU7
OLEU28
OSER35
VARG43

site_idAJ4
Number of Residues6
Detailsbinding site for residue CUA O 303
ChainResidue
OHIS161
OCYS196
OGLU198
OCYS200
OHIS204
OMET207

site_idAJ5
Number of Residues10
Detailsbinding site for residue PSC O 304
ChainResidue
NPHE321
NALA325
NHIS328
OHIS52
OMET56
OASP57
OTRP65
RGLU6
RASP8
VARG10

site_idAJ6
Number of Residues8
Detailsbinding site for residue CHD P 301
ChainResidue
NHIS233
NASP300
NTHR301
NTYR304
NHOH878
PTRP99
PHIS103
PPGV304

site_idAJ7
Number of Residues4
Detailsbinding site for residue NA P 302
ChainResidue
PHIS148
PHIS232
PGLU236
PHOH458

site_idAJ8
Number of Residues21
Detailsbinding site for residue PGV P 303
ChainResidue
PTRP58
PVAL61
PSER65
PTHR66
PHIS71
PHIS207
PILE210
PTHR213
PPHE214
PARG221
PHIS226
PPHE227
PTHR228
PHIS231
PPHE233
PGLY234
PCDL305
PHOH402
PHOH424
PHOH476
SHOH219

site_idAJ9
Number of Residues9
Detailsbinding site for residue PGV P 304
ChainResidue
GALA1
NASP298
PTRP99
PTYR102
PHIS103
PALA107
PCHD301
PHOH482
UASN22

site_idAK1
Number of Residues11
Detailsbinding site for residue CDL P 305
ChainResidue
PMET51
PTYR55
PARG59
PARG63
PPHE67
PTHR213
PPHE220
PLYS224
PHIS226
PPGV303
PHOH473

site_idAK2
Number of Residues4
Detailsbinding site for residue CHD P 306
ChainResidue
PARG156
PPHE164
PLEU223
WPHE1

site_idAK3
Number of Residues5
Detailsbinding site for residue EDO P 307
ChainResidue
PPHE35
PASN38
TLYS58
TPRO59
TSER61

site_idAK4
Number of Residues6
Detailsbinding site for residue DMU P 308
ChainResidue
PASN38
PSER39
PDMU309
PHOH426
PHOH486
WTYR45

site_idAK5
Number of Residues8
Detailsbinding site for residue DMU P 309
ChainResidue
PSER29
PMET33
PPHE37
PDMU308
WTYR48
WCYS49
WTRP52
WALA53

site_idAK6
Number of Residues9
Detailsbinding site for residue TGL Q 201
ChainResidue
NTRP334
NGLY343
NHOH708
OTHR47
QTHR75
QGLU77
QTRP78
VARG16
VHIS20

site_idAK7
Number of Residues4
Detailsbinding site for residue EDO R 201
ChainResidue
RTYR18
RLYS21
RGLU28
RHOH301

site_idAK8
Number of Residues4
Detailsbinding site for residue ZN S 101
ChainResidue
SCYS60
SCYS62
SCYS82
SCYS85

site_idAK9
Number of Residues9
Detailsbinding site for residue EDO S 102
ChainResidue
NTHR490
NEDO613
NHOH714
SSER67
STHR68
SVAL69
STRP71
SHOH212
SHOH230

site_idAL1
Number of Residues6
Detailsbinding site for residue EDO S 103
ChainResidue
NGLU266
SASP65
SASN66
SSER67
STHR68
SHOH231

site_idAL2
Number of Residues10
Detailsbinding site for residue PEK T 101
ChainResidue
CLYS77
CARG80
CTRP240
CVAL247
TSER2
TGLY6
THIS8
TTPO11
TTRP16
THOH235

site_idAL3
Number of Residues21
Detailsbinding site for residue PEK T 102
ChainResidue
NHIS151
NVAL155
NALA203
NPGV607
PALA178
PTYR181
PTYR182
PALA184
PPHE186
PTHR187
PILE188
PPHE198
PGLY202
PPHE203
TTRP62
TTHR68
TPHE69
TPHE70
THIS71
TASN76
THOH208

site_idAL4
Number of Residues9
Detailsbinding site for residue PEK T 103
ChainResidue
ASER279
BCHD302
PLYS157
PHIS158
PGLN161
SALA1
TARG17
TCDL104
THOH237

site_idAL5
Number of Residues19
Detailsbinding site for residue CDL T 104
ChainResidue
APHE282
AILE286
AASP300
ATYR304
ASER307
AILE311
BTYR85
BHOH455
PASN125
PLEU127
PLEU131
TSER27
TCYS31
TASN34
TLEU37
THIS38
TPEK103
THOH230
THOH238

site_idAL6
Number of Residues5
Detailsbinding site for residue CHD W 101
ChainResidue
NILE3
WTYR32
WMET36
WTHR37
WLEU40

site_idAL7
Number of Residues14
Detailsbinding site for residue TGL Y 101
ChainResidue
NPHE2
NTHR17
NPHE22
NTRP25
NPHE393
NPHE400
NSER401
YPRO12
YPHE13
YARG20
YMET24
YMET25
YPHE28
YPHE29

site_idAL8
Number of Residues6
Detailsbinding site for residue DMU Z 101
ChainResidue
QTRP98
ZLEU27
ZLEU28
ZTRP32
ZTYR35
ZHIS36

site_idAL9
Number of Residues17
Detailsbinding site for Di-peptide HIS N 240 and TYR N 244
ChainResidue
NTRP236
NPHE238
NGLY239
NPRO241
NGLU242
NVAL243
NILE245
NLEU246
NILE247
NLEU248
NILE280
NGLY284
NVAL287
NHIS290
NILE312
NHEA602
NCU603

Functional Information from PROSITE/UniProt
site_idPS00077
Number of Residues56
DetailsCOX1_CUB Heme-copper oxidase catalytic subunit, copper B binding region signature. WFFGHPeVyililpgfgmishivtyysgkkepfgymgmvwammsigflgfivwa.HH
ChainResidueDetails
ATRP236-HIS291

site_idPS00848
Number of Residues23
DetailsCOX5B_1 Cytochrome c oxidase subunit Vb, zinc binding region signature. VIWfwlhkgeaqrCpsCGthYKL
ChainResidueDetails
FVAL69-LEU91

site_idPS01329
Number of Residues18
DetailsCOX6A Cytochrome c oxidase subunit VIa signature. IRtKpFsWGDGnHTfFhN
ChainResidueDetails
GILE55-ASN72

site_idPS00078
Number of Residues49
DetailsCOX2 CO II and nitrous oxide reductase dinuclear copper centers signature. VlHswavpslglktdaipgrlnqttlmssrpglyygq......CseiCgsnHsfM
ChainResidueDetails
BVAL159-MET207

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues20
DetailsTOPO_DOM: Mitochondrial matrix => ECO:0000269|PubMed:27605664
ChainResidueDetails
MILE1-SER11
NSER262-GLY269
NSER401-ASN406
NLYS479-LYS514
ZILE1-SER11
FCYS82
FCYS85
SCYS60
SCYS62
SCYS82
SCYS85
NMET171-PRO182

site_idSWS_FT_FI2
Number of Residues46
DetailsTRANSMEM: Helical => ECO:0000269|PubMed:27605664
ChainResidueDetails
MPRO12-TYR35
ZPRO12-TYR35
FLYS90
SLYS37
SLYS55
SLYS90
PALA184-ASP190
PTYR257-SER261

site_idSWS_FT_FI3
Number of Residues20
DetailsTOPO_DOM: Mitochondrial intermembrane => ECO:0000269|PubMed:27605664
ChainResidueDetails
MHIS36-ALA46
ZHIS36-ALA46

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P17665
ChainResidueDetails
LLYS9
YLYS9
QLYS7
QLYS38
PGLU153-ASP155
PLYS224-HIS232

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P13073
ChainResidueDetails
DLYS31
OCYS200
OHIS204
OMET207
QLYS31
BGLU198
BCYS200
BHIS204
BMET207
OHIS161
OCYS196
OGLU198

site_idSWS_FT_FI6
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P10888
ChainResidueDetails
DSER34
DSER36
QSER34
QSER36
NARG213-ASP227
NVAL287-ASP298

site_idSWS_FT_FI7
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P19783
ChainResidueDetails
DLYS45
QLYS45

site_idSWS_FT_FI8
Number of Residues64
DetailsTRANSMEM: Helical; Name=VI => ECO:0000269|PubMed:27605664
ChainResidueDetails
CGLY191-LEU223
PGLY191-LEU223

site_idSWS_FT_FI9
Number of Residues46
DetailsTRANSMEM: Helical; Name=VII => ECO:0000269|PubMed:27605664
ChainResidueDetails
CPHE233-ILE256
PPHE233-ILE256

site_idSWS_FT_FI10
Number of Residues32
DetailsTRANSMEM: Helical; Name=VII => ECO:0000269|PubMed:27605664
ChainResidueDetails
ATYR270-ILE286
NTYR270-ILE286

site_idSWS_FT_FI11
Number of Residues56
DetailsTRANSMEM: Helical; Name=VIII => ECO:0000269|PubMed:27605664
ChainResidueDetails
AVAL299-LEU327
NVAL299-LEU327

site_idSWS_FT_FI12
Number of Residues14
DetailsTOPO_DOM: Mitochondrial matrix => ECO:0000269|PubMed:27605664
ChainResidueDetails
AHIS328-SER335
NHIS328-SER335

site_idSWS_FT_FI13
Number of Residues42
DetailsTRANSMEM: Helical; Name=IX => ECO:0000269|PubMed:27605664
ChainResidueDetails
APRO336-VAL357
NPRO336-VAL357

site_idSWS_FT_FI14
Number of Residues48
DetailsTOPO_DOM: Mitochondrial intermembrane => ECO:0000269|PubMed:27605664
ChainResidueDetails
ALEU358-THR370
ASER434-ALA446
NLEU358-THR370
NSER434-ALA446

site_idSWS_FT_FI15
Number of Residues58
DetailsTRANSMEM: Helical; Name=X => ECO:0000269|PubMed:27605664
ChainResidueDetails
ATYR371-PHE400
NTYR371-PHE400

site_idSWS_FT_FI16
Number of Residues52
DetailsTRANSMEM: Helical; Name=XI => ECO:0000269|PubMed:27605664
ChainResidueDetails
AASP407-LEU433
NASP407-LEU433

site_idSWS_FT_FI17
Number of Residues62
DetailsTRANSMEM: Helical; Name=XII => ECO:0000269|PubMed:27605664
ChainResidueDetails
ATYR447-SER478
NTYR447-SER478

site_idSWS_FT_FI18
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:27605664, ECO:0000305|PubMed:23537388
ChainResidueDetails
AGLU40
AGLY45
ASER441
NGLU40
NGLY45
NSER441

site_idSWS_FT_FI19
Number of Residues6
DetailsBINDING: axial binding residue => ECO:0000269|PubMed:20385840, ECO:0000269|PubMed:8638158
ChainResidueDetails
AHIS61
AHIS376
AHIS378
NHIS61
NHIS376
NHIS378

site_idSWS_FT_FI20
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:20385840, ECO:0000269|PubMed:8638158
ChainResidueDetails
AHIS240
NASP369
AHIS290
AHIS291
AHIS368
AASP369
NHIS240
NHIS290
NHIS291
NHIS368

site_idSWS_FT_FI21
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305
ChainResidueDetails
ATYR244
NTYR244

site_idSWS_FT_FI22
Number of Residues2
DetailsMOD_RES: N-formylmethionine => ECO:0000269|PubMed:2165784
ChainResidueDetails
AFME1
NFME1

site_idSWS_FT_FI23
Number of Residues4
DetailsCROSSLNK: 1'-histidyl-3'-tyrosine (His-Tyr) => ECO:0000269|PubMed:10338009
ChainResidueDetails
AHIS240
ATYR244
NHIS240
NTYR244

Catalytic Information from CSA
site_idMCSA1
Number of Residues14
DetailsM-CSA 124
ChainResidueDetails
AHIS61metal ligand
AHIS290metal ligand
AHIS291metal ligand, proton acceptor, proton donor
ATHR316proton acceptor, proton donor, proton relay
ALYS319proton acceptor, proton donor, proton relay
AARG438proton acceptor, proton donor, proton relay
AASP91proton acceptor, proton donor, proton relay
ATRP126proton acceptor, proton donor, proton relay
ASER156proton acceptor, proton donor, proton relay
ASER157proton acceptor, proton donor, proton relay
AHIS240covalently attached, electrostatic stabiliser, metal ligand, radical stabiliser
AGLU242proton acceptor, proton donor, proton relay
ATYR244covalently attached, hydrogen radical donor, proton acceptor, proton donor, proton relay, single electron acceptor
ASER255proton acceptor, proton donor, proton relay

site_idMCSA2
Number of Residues14
DetailsM-CSA 124
ChainResidueDetails
NHIS61metal ligand
NHIS290metal ligand
NHIS291metal ligand, proton acceptor, proton donor
NTHR316proton acceptor, proton donor, proton relay
NLYS319proton acceptor, proton donor, proton relay
NARG438proton acceptor, proton donor, proton relay
NASP91proton acceptor, proton donor, proton relay
NTRP126proton acceptor, proton donor, proton relay
NSER156proton acceptor, proton donor, proton relay
NSER157proton acceptor, proton donor, proton relay
NHIS240covalently attached, electrostatic stabiliser, metal ligand, radical stabiliser
NGLU242proton acceptor, proton donor, proton relay
NTYR244covalently attached, hydrogen radical donor, proton acceptor, proton donor, proton relay, single electron acceptor
NSER255proton acceptor, proton donor, proton relay

219140

PDB entries from 2024-05-01

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